Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10m02
(852 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058787-1|AAL14016.1| 525|Drosophila melanogaster SD08430p pro... 163 4e-40
AE014296-2800|AAN11741.1| 525|Drosophila melanogaster CG9706-PB... 163 4e-40
AE014296-2799|AAF49413.1| 525|Drosophila melanogaster CG9706-PA... 163 4e-40
AY058544-1|AAL13773.1| 560|Drosophila melanogaster LD24478p pro... 29 8.1
AE014298-2788|AAF48903.1| 560|Drosophila melanogaster CG7332-PA... 29 8.1
>AY058787-1|AAL14016.1| 525|Drosophila melanogaster SD08430p
protein.
Length = 525
Score = 163 bits (395), Expect = 4e-40
Identities = 78/192 (40%), Positives = 107/192 (55%)
Frame = -3
Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTLLGDSGPXXXXXXXXX 527
Q+I+P+ + ++T GP P+ ++LKA TP ++
Sbjct: 330 QLILPLAVGRYTNGPRPMDVYLKAIPYRIIMATVATGLAYITPYIVRGGAVPAYYYVLLI 389
Query: 526 XXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHLT 347
Y +Q LY MFVA MAFFAK+SDP VGGTYMT LNT+ NLG NWP+T+ LW +D LT
Sbjct: 390 TSYAIYQVFLYSMFVAAMAFFAKISDPAVGGTYMTFLNTLCNLGGNWPNTVVLWLVDVLT 449
Query: 346 YKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRPTIN 167
+K CS + +N C E + C++ G C DGYY+E+ ICV+ G +WL R I
Sbjct: 450 WKQCSNN--AENTCQGKEEQQSCEASAGKCEITFDGYYLESGICVLYGIVWLLLVRKWIV 507
Query: 166 RLQRLPPSAWQI 131
LQ LP +W +
Sbjct: 508 YLQDLPVRSWLV 519
Score = 38.3 bits (85), Expect = 0.013
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = -2
Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
+L T K+ F A+DAV+ LKL++AGVP++
Sbjct: 290 ILLTVKVTFAASDAVTSLKLIDAGVPKD 317
>AE014296-2800|AAN11741.1| 525|Drosophila melanogaster CG9706-PB,
isoform B protein.
Length = 525
Score = 163 bits (395), Expect = 4e-40
Identities = 78/192 (40%), Positives = 107/192 (55%)
Frame = -3
Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTLLGDSGPXXXXXXXXX 527
Q+I+P+ + ++T GP P+ ++LKA TP ++
Sbjct: 330 QLILPLAVGRYTNGPRPMDVYLKAIPYRIIMATVATGLAYITPYIVRGGAVPAYYYVLLI 389
Query: 526 XXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHLT 347
Y +Q LY MFVA MAFFAK+SDP VGGTYMT LNT+ NLG NWP+T+ LW +D LT
Sbjct: 390 TSYAIYQVFLYSMFVAAMAFFAKISDPAVGGTYMTFLNTLCNLGGNWPNTVVLWLVDVLT 449
Query: 346 YKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRPTIN 167
+K CS + +N C E + C++ G C DGYY+E+ ICV+ G +WL R I
Sbjct: 450 WKQCSNN--AENTCQGKEEQQSCEASAGKCEITFDGYYLESGICVLYGIVWLLLVRKWIV 507
Query: 166 RLQRLPPSAWQI 131
LQ LP +W +
Sbjct: 508 YLQDLPVRSWLV 519
Score = 38.3 bits (85), Expect = 0.013
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = -2
Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
+L T K+ F A+DAV+ LKL++AGVP++
Sbjct: 290 ILLTVKVTFAASDAVTSLKLIDAGVPKD 317
>AE014296-2799|AAF49413.1| 525|Drosophila melanogaster CG9706-PA,
isoform A protein.
Length = 525
Score = 163 bits (395), Expect = 4e-40
Identities = 78/192 (40%), Positives = 107/192 (55%)
Frame = -3
Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTLLGDSGPXXXXXXXXX 527
Q+I+P+ + ++T GP P+ ++LKA TP ++
Sbjct: 330 QLILPLAVGRYTNGPRPMDVYLKAIPYRIIMATVATGLAYITPYIVRGGAVPAYYYVLLI 389
Query: 526 XXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHLT 347
Y +Q LY MFVA MAFFAK+SDP VGGTYMT LNT+ NLG NWP+T+ LW +D LT
Sbjct: 390 TSYAIYQVFLYSMFVAAMAFFAKISDPAVGGTYMTFLNTLCNLGGNWPNTVVLWLVDVLT 449
Query: 346 YKSCSLSKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRPTIN 167
+K CS + +N C E + C++ G C DGYY+E+ ICV+ G +WL R I
Sbjct: 450 WKQCSNN--AENTCQGKEEQQSCEASAGKCEITFDGYYLESGICVLYGIVWLLLVRKWIV 507
Query: 166 RLQRLPPSAWQI 131
LQ LP +W +
Sbjct: 508 YLQDLPVRSWLV 519
Score = 38.3 bits (85), Expect = 0.013
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = -2
Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
+L T K+ F A+DAV+ LKL++AGVP++
Sbjct: 290 ILLTVKVTFAASDAVTSLKLIDAGVPKD 317
>AY058544-1|AAL13773.1| 560|Drosophila melanogaster LD24478p
protein.
Length = 560
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 525 NMSMLR*EYEGPESPSSVGVKATRAAARGPTSSL 626
N ++R + G +SPSSV K+ AAA T+S+
Sbjct: 2 NEKIVREQRGGEDSPSSVSAKSATAAASASTASM 35
>AE014298-2788|AAF48903.1| 560|Drosophila melanogaster CG7332-PA
protein.
Length = 560
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 525 NMSMLR*EYEGPESPSSVGVKATRAAARGPTSSL 626
N ++R + G +SPSSV K+ AAA T+S+
Sbjct: 2 NEKIVREQRGGEDSPSSVSAKSATAAASASTASM 35
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,753,987
Number of Sequences: 53049
Number of extensions: 843204
Number of successful extensions: 2697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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