Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m02
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical pr...   148   6e-36
Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical pr...   148   6e-36
Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical pr...   148   6e-36
Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical pr...   148   6e-36
AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical...    31   1.0  
U39999-9|AAY44013.1|  122|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calc...    30   1.8  
AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calc...    30   1.8  
AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPas...    30   1.8  
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical
           protein T26C5.3d protein.
          Length = 549

 Score =  148 bits (358), Expect = 6e-36
 Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
 Frame = -3

Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXXXX 530
           QI++P ++ K T GP PL+++L AF               +TP   L D           
Sbjct: 348 QIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYIVW 407

Query: 529 XXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHL 350
              Y+FHQ   Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L   D  
Sbjct: 408 ITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTDWF 467

Query: 349 TYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRP 176
           TYK C +  +K     C++ V A+ C S G  C   +DGY+I   IC ++G +W +    
Sbjct: 468 TYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVFYN 527

Query: 175 TINRLQRLPPSAWQI 131
            I  LQ++P S W++
Sbjct: 528 KIKYLQKIPRSQWRV 542



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -2

Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
           +L T KL F A+D ++ LKL+E G+P++
Sbjct: 308 ILLTGKLAFAASDGMTSLKLIEMGIPKD 335


>Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical
           protein T26C5.3c protein.
          Length = 574

 Score =  148 bits (358), Expect = 6e-36
 Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
 Frame = -3

Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXXXX 530
           QI++P ++ K T GP PL+++L AF               +TP   L D           
Sbjct: 373 QIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYIVW 432

Query: 529 XXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHL 350
              Y+FHQ   Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L   D  
Sbjct: 433 ITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTDWF 492

Query: 349 TYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRP 176
           TYK C +  +K     C++ V A+ C S G  C   +DGY+I   IC ++G +W +    
Sbjct: 493 TYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVFYN 552

Query: 175 TINRLQRLPPSAWQI 131
            I  LQ++P S W++
Sbjct: 553 KIKYLQKIPRSQWRV 567



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -2

Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
           +L T KL F A+D ++ LKL+E G+P++
Sbjct: 333 ILLTGKLAFAASDGMTSLKLIEMGIPKD 360


>Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical
           protein T26C5.3b protein.
          Length = 538

 Score =  148 bits (358), Expect = 6e-36
 Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
 Frame = -3

Query: 706 QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXXXX 530
           QI++P ++ K T GP PL+++L AF               +TP   L D           
Sbjct: 337 QIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYIVW 396

Query: 529 XXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHL 350
              Y+FHQ   Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L   D  
Sbjct: 397 ITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTDWF 456

Query: 349 TYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRP 176
           TYK C +  +K     C++ V A+ C S G  C   +DGY+I   IC ++G +W +    
Sbjct: 457 TYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVFYN 516

Query: 175 TINRLQRLPPSAWQI 131
            I  LQ++P S W++
Sbjct: 517 KIKYLQKIPRSQWRV 531



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -2

Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
           +L T KL F A+D ++ LKL+E G+P++
Sbjct: 297 ILLTGKLAFAASDGMTSLKLIEMGIPKD 324


>Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical protein
            T26C5.3a protein.
          Length = 632

 Score =  148 bits (358), Expect = 6e-36
 Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
 Frame = -3

Query: 706  QIIMPVILAKHTTGPAPLSLWLKAFXXXXXXXXXXXXXXAFTPTL-LGDSGPXXXXXXXX 530
            QI++P ++ K T GP PL+++L AF               +TP   L D           
Sbjct: 431  QIMLPWMIGKWTAGPRPLNVFLLAFPYRIFIGGVFAALVWWTPHFSLPDGKFEYSVYIVW 490

Query: 529  XXXYVFHQTCLYCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNLGTNWPSTLALWAIDHL 350
               Y+FHQ   Y MFV++MAF A++SDP +GGTYMT+LNT++NLG NWP T+ L   D  
Sbjct: 491  ITGYIFHQLATYSMFVSMMAFIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTDWF 550

Query: 349  TYKSCSL--SKLTDNKCSSTVEAELCKSEGGTCVTEIDGYYIETVICVILGFLWLQWGRP 176
            TYK C +  +K     C++ V A+ C S G  C   +DGY+I   IC ++G +W +    
Sbjct: 551  TYKDCVVKGTKEILYACNTKVLADQCSSGGDVCEVAVDGYFISVAICSVIGVIWYKVFYN 610

Query: 175  TINRLQRLPPSAWQI 131
             I  LQ++P S W++
Sbjct: 611  KIKYLQKIPRSQWRV 625



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -2

Query: 827 VLFTAKLGFCAADAVSGLKLVEAGVPRE 744
           +L T KL F A+D ++ LKL+E G+P++
Sbjct: 391 ILLTGKLAFAASDGMTSLKLIEMGIPKD 418


>AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical
           protein Y39B6A.25 protein.
          Length = 542

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 159 CNLLMVGRPHCNHKKPRITHITVSM*YPSIS 251
           C  L + RP  NHK PR  H+  SM +P  S
Sbjct: 503 CRQLDIYRPRVNHKLPRDNHVYRSMCHPHYS 533


>U39999-9|AAY44013.1|  122|Caenorhabditis elegans Hypothetical
           protein F41G3.21 protein.
          Length = 122

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 225 LLYVLSSASYGCSGVDPPSTGYSDCLR 145
           +L VL S S+GC  +  P TG SDC R
Sbjct: 8   VLAVLCSYSWGCVDLTNPRTGTSDCAR 34


>Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical protein
            W09C2.3c protein.
          Length = 1249

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 223  VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 125
            ++C++LGF  L WG+       +  P AW++ +
Sbjct: 1064 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1096


>Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical protein
            W09C2.3b protein.
          Length = 1228

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 223  VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 125
            ++C++LGF  L WG+       +  P AW++ +
Sbjct: 1043 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1075


>Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical protein
            W09C2.3a protein.
          Length = 1252

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 223  VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 125
            ++C++LGF  L WG+       +  P AW++ +
Sbjct: 1067 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1099


>AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calcium
            ATPase (136.9kD) (mca-1) protein.
          Length = 1249

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 223  VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 125
            ++C++LGF  L WG+       +  P AW++ +
Sbjct: 1064 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1096


>AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calcium
            ATPase (136.6kD) (mca-1) protein.
          Length = 1252

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 223  VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 125
            ++C++LGF  L WG+       +  P AW++ +
Sbjct: 1067 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1099


>AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1228

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 223  VICVILGFLWLQWGRPTINRLQRLPPSAWQISR 125
            ++C++LGF  L WG+       +  P AW++ +
Sbjct: 1043 IVCLVLGFSTLIWGQIVATIPSKKLPKAWKVGK 1075


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 319 TDNKCSSTVEAELCKSEGGTCVTEID 242
           T NKC + V++++C S GG C   +D
Sbjct: 414 TLNKCIAKVKSDVCHSTGGICKAAMD 439


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 243 SISVTQVPPSDLHNSASTVEEHLLSVNLDSEQLLYVK*SIAQSAKVLGQLVPRLETVFNN 422
           S+S  Q  PSD+  S S ++  +LS    +E   YVK    +S  +L + +    +VFNN
Sbjct: 147 SLSFVQASPSDISTSLSHIDYRVLSRISITELKQYVKDGHLRSCPMLERSI----SVFNN 202

Query: 423 V 425
           +
Sbjct: 203 L 203


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 496 YCMFVAVMAFFAKVSDPTVGGTYMTLLNTVSNL 398
           +C+  A+    AK+SD     T+MT L TV++L
Sbjct: 351 FCIISALFELNAKISDHMEYETFMTTLQTVNSL 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,343,606
Number of Sequences: 27780
Number of extensions: 406929
Number of successful extensions: 990
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)