Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m01
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    24   2.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    24   3.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    22   9.7  

>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 110 SSWGWSATLHFRDT 151
           ++W WS+  H RDT
Sbjct: 150 NAWVWSSVFHIRDT 163


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 119 PRTIGSRNVVLG*GYALEEVFIERAEDVRS 30
           PR+IG+RN  LG G    +VF+ R  D+RS
Sbjct: 460 PRSIGTRNSGLGTG----KVFV-RYSDIRS 484


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
 Frame = +2

Query: 71  VHNLNLAQRYDYRS--SWGWSATLHF 142
           V  L     Y YR   SWGW    HF
Sbjct: 523 VEGLQWVLFYYYRGCQSWGWYYNYHF 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,178
Number of Sequences: 5004
Number of extensions: 8021
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)