Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10m01
         (205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   0.84 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   0.84 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   2.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   3.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   5.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   5.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   7.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 0.84
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 12  PPVECVRAHILCALNKYFLKCITLT*HNVTTTDRP 116
           P ++C  AHI C   +   KC   T    TT + P
Sbjct: 359 PVLDCHTAHIACKFAEIKEKCDRRT--GKTTEENP 391


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 0.84
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 12  PPVECVRAHILCALNKYFLKCITLT*HNVTTTDRP 116
           P ++C  AHI C   +   KC   T    TT + P
Sbjct: 70  PVLDCHTAHIACKFAEIKEKCDRRT--GKTTEENP 102


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 12  PPVECVRAHILCALNKYFLKC 74
           P ++C  AHI C       KC
Sbjct: 359 PVLDCHTAHIACKFADIKEKC 379


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 50  RAEDVRSNTF 21
           RAED+  NTF
Sbjct: 180 RAEDINMNTF 189


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 118 GVERYTSF*RYF 153
           GV++ T F RYF
Sbjct: 104 GVDKNTQFLRYF 115


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 118 GVERYTSF*RYF 153
           GV++ T F RYF
Sbjct: 104 GVDKNTQFLRYF 115


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 77  YALEEVFIERAEDVRSNTFH 18
           Y LE   I   ED+  NT++
Sbjct: 214 YNLENKLIYFIEDIGLNTYY 233


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +2

Query: 86  LAQRYDYRSSWGWSA 130
           + Q +DY ++W + A
Sbjct: 189 IVQSFDYNNTWVYIA 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,224
Number of Sequences: 438
Number of extensions: 537
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)