Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l23
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 30 0.35
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 30 0.35
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.80
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 29 1.1
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 29 1.1
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 28 1.8
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 27 3.2
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 3.2
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 27 3.2
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 27 4.3
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 4.3
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 5.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 5.6
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 5.6
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 26 7.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 7.5
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 9.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 9.9
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 30.3 bits (65), Expect = 0.35
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -2
Query: 292 CGAAFCRPSQLSEHIQKHNLDNTRNCCVCRHALDSKRRSALFSCRYCHQPFIRAYCCELH 113
CG + RPS L +H++ H+ + C + R+S L + CH ++ + C H
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTN-VKPFSC--H 86
Query: 112 QRSCAKNF 89
C F
Sbjct: 87 YDGCDAQF 94
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = -2
Query: 301 CNICGAAFCRPSQLSEHIQKHNLD-NTRNCCVCRHALDSKRRSALFSCRYCHQPFIRAYC 125
C+ICG F + L H+ H R C K+ S H I
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPME-GCKKSFTRSSALKKHISVIHEGN 264
Query: 124 CELHQRSCAKNFGVRH 77
H SC FG +H
Sbjct: 265 MAFHCDSCGTKFGYKH 280
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.35
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 307 YICNICGAAFCRPSQLSEHIQKHNLDNTRNC 215
Y+C C AF R L HI+ H + C
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTC 100
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.80
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 277 CRPSQLSEHIQKHNLDNTRNCCVCRHALDSKRRSAL 170
CRPSQ S K+NL NT R LD K S +
Sbjct: 976 CRPSQGSSPKLKNNLSNTEERMGSRALLDDKTDSVI 1011
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 466 TIAVNTEPIGLLGLLKISKETIRQILSYMPRIDYN--SYLSMVQFPQLSKIGE 314
T +T P LL++ +ET + L+ R+DY SYL + F + SK+ E
Sbjct: 259 TFVWSTRPHIASKLLRLPEETFVKFLNASFRLDYPDLSYLYQMDFSEPSKVNE 311
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 321 SASRIISAIFAGQPSVGRHSSANTFRNIIWTTRGIAVFAGMPWILKDV 178
SA+ + F G P+ G+ S N+ RN+ A+ P + K +
Sbjct: 141 SANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRI 188
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -2
Query: 316 ESDYIC--NICGAAFCRPSQLSEHIQKHNLDNTRNCCVCR 203
+ Y+C N C R + HIQ H D C +C+
Sbjct: 440 DGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCK 479
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 322 IGESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNC-CVCR-HALDSKRR 179
+ + Y C++C A F R L H++ H C C+ R + LD+ R
Sbjct: 468 LSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNR 517
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 193 DSKRRSALFSCRYCHQPFIRAYCCELHQRSCAKNFGVRHAESN 65
D K + F C C + F + E H++S A N V+ +S+
Sbjct: 235 DGKDSTEAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSS 277
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.1 bits (57), Expect = 3.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 217 CCVCRHALDSKRRSALFSCRYCHQPF 140
C C+++L + + C+YC+ PF
Sbjct: 73 CGACKNSLTVEEYRSTVHCKYCNHPF 98
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 589 SRSISLPNSLEEPTKDVCTEIMDSLSKDTKNRVSKKNKRCFTIAVNTEPIGLLGLLKISK 410
S +S+ +S E D +MDSLS + + K++ T + ++GLL +S
Sbjct: 256 SAQLSIQSSAAEKLYDDALNVMDSLSGGNQQLIKAKSRSSRTARLLFCIFTVMGLLLLSL 315
Query: 409 ETI 401
+ I
Sbjct: 316 DRI 318
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 66 LLSACRTPKFFAHDLWWSSQQYALMNG 146
LLSAC PK + HDL SQ ++G
Sbjct: 154 LLSACVYPKEYEHDLLLQSQARINLHG 180
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 811 LSSNDLNTSRSETFGFYKTES 749
LSS+DLNT++SE Y+ E+
Sbjct: 673 LSSDDLNTAQSENLPIYEQEN 693
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/38 (26%), Positives = 15/38 (39%)
Frame = -2
Query: 319 GESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNCCVC 206
G ++C C F R L HI+ + C+C
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCIC 456
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 449 RTNRFVRSAEDIEGDDKTNPVVHAPN 372
R NRF+ SA I+ +KTN H+P+
Sbjct: 13 RCNRFIDSAALIDCTNKTNQREHSPS 38
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 69 LSACRTPKFFAHDLWWSSQQYALMNGWWQYRHENKAERLLESKACRQTQQFLVLSKLCF* 248
L C K DL + +QY + W Q + K + +S+A R L LC
Sbjct: 111 LPHCFIVKDLVPDLTYFYKQYKSIEPWLQNDNIPKDKEFYQSRADRAKLDGLYECILCA- 169
Query: 249 MCSLSC 266
CS SC
Sbjct: 170 CCSTSC 175
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 169 FSCRYCHQPFIRAYCCELHQRSCA 98
F C YC +PF+ + H+ SC+
Sbjct: 420 FICCYCTKPFLSISKLQEHESSCS 443
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 479 QKVFYYSGEYRTNRFVRSAEDIE 411
QK+ YYSG Y T VR+ D++
Sbjct: 495 QKLDYYSGNYDTFLKVRAERDVQ 517
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 533 GNHGFIIQRYKKQGFEEKQKVFYYSGE 453
GN GF+ KQGF E + + SG+
Sbjct: 48 GNFGFVCDSLAKQGFLEPLRRYALSGK 74
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 9.9
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = -2
Query: 466 TIAVNTEPIGLLGLLKISKETIRQILSYMPRIDYNSYLSMVQFPQLSKIGESDYICNICG 287
+I VN + +L ++ + +T+ S+ R Y S V S + E+ + +
Sbjct: 1053 SIDVNKR-LSMLLTMQDALQTLFLSYSWHIRSSYADKTSKVFMNDSSVLKEAS-LSGLKE 1110
Query: 286 AAFCRPSQLSEHIQKHNLDNTRNCCVC 206
FC P + E + + L+N CC C
Sbjct: 1111 FYFCEPLECVETLVQIYLENNVECCQC 1137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,359
Number of Sequences: 5004
Number of extensions: 70181
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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