Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l23
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 38 0.013
04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571... 34 0.12
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 33 0.28
02_04_0293 + 21644415-21644533,21644686-21645118 32 0.48
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 31 1.1
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 31 1.1
12_01_0370 - 2835071-2835285,2835427-2836045 30 1.9
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 30 1.9
04_04_0054 + 22400278-22400420,22400545-22401037 29 3.4
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 29 3.4
01_05_0421 + 21990034-21990392,21991691-21992681 29 3.4
01_01_0990 + 7847066-7847478,7847713-7848679 29 3.4
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 29 4.5
02_04_0316 - 21978330-21979397 29 4.5
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 29 5.9
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 29 5.9
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 29 5.9
08_01_0379 + 3371125-3371988 28 7.8
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 28 7.8
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 37.5 bits (83), Expect = 0.013
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 322 IGESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNC 215
+ E D+ C CGA+F +P+ L +H+Q H+ + + C
Sbjct: 55 VHEGDHTCQECGASFQKPAHLKQHMQSHSDERSFIC 90
>04_04_0330 +
24456200-24456261,24456385-24456520,24457100-24457165,
24457260-24457310,24457399-24457455,24457742-24457827,
24458207-24458216,24458385-24458450,24458744-24458784,
24460050-24460182,24460857-24461045,24461145-24461219,
24462228-24462358,24463155-24463229,24463385-24463562
Length = 451
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -2
Query: 514 SKDTKNRVSKKNKRCFTIAVNTEPIGLLGLLKISKETIRQILSYMPRIDY 365
SKD K + +KN+ F + T P+ + +K +K + +L ++P++DY
Sbjct: 279 SKDAKGKDLRKNQS-FDAVIMTAPLSNVQRMKFTKGGVPFVLDFLPKVDY 327
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 33.1 bits (72), Expect = 0.28
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -2
Query: 319 GESDYICNI--CGAAFCRPSQLSEHIQKHNLDNTRNC----CVCRHALDSKRRS 176
G+ D+IC CG AF L H++ H L+N C C R DSK +S
Sbjct: 142 GQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKS 195
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 217 CCVCR-HALDSKRRSALFSCRYCHQPFIRAYCCELHQRSCA 98
CC+C H L + LF C +CH YC EL+ R A
Sbjct: 15 CCMCGDHGLPRE----LFRCGHCHHRLQHRYCSELYPRVAA 51
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 316 ESD-YICNICGAAFCRPSQLSEHIQKHNL 233
ESD Y+C ICG F R L H ++H +
Sbjct: 27 ESDRYVCEICGQGFQREQNLQMHRRRHKV 55
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 307 YICNICGAAFCRPSQLSEHIQKHNL 233
Y+C ICG F R L H + HNL
Sbjct: 74 YVCEICGKGFQRDQNLQLHRRGHNL 98
>12_01_0370 - 2835071-2835285,2835427-2836045
Length = 277
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 87 PKFFAHDLWWSSQQYALMNGWWQYRHENKAE 179
P F + W SSQ Y L GW +Y E + +
Sbjct: 85 PWRFRYSYWTSSQSYVLTKGWSRYVKEKRLD 115
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 87 PKFFAHDLWWSSQQYALMNGWWQYRHENKAE 179
P F + W SSQ Y L GW +Y E + +
Sbjct: 87 PWRFRYSYWTSSQSYVLTKGWSRYVKEKRLD 117
>04_04_0054 + 22400278-22400420,22400545-22401037
Length = 211
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 217 CCVCRHALDSKRRSALFSCRYCHQPFIRAYCCELHQRSCA 98
CC+C D LF CR C YC +L+ R+ A
Sbjct: 23 CCMCG---DRGLPEELFRCRLCRVRLQHRYCSDLYPRATA 59
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 307 YICNICGAAFCRPSQLSEHIQKHNL 233
++C ICG F R L H + HNL
Sbjct: 81 FVCEICGKGFQRDQNLQLHRRGHNL 105
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 307 YICNICGAAFCRPSQLSEHIQKHNL 233
++C ICG F R L H + HNL
Sbjct: 6 FVCEICGKGFQRDQNLQLHRRGHNL 30
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 307 YICNICGAAFCRPSQLSEHIQKHNL 233
++C ICG F R L H + HNL
Sbjct: 25 FVCEICGKGFQRDQNLQLHRRGHNL 49
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 307 YICNICGAAFCRPSQLSEHIQKHNL 233
++C +CG F R L H + HNL
Sbjct: 59 FVCEVCGKGFQRDQNLQLHRRGHNL 83
>02_04_0316 - 21978330-21979397
Length = 355
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Frame = -2
Query: 349 MVQFPQLSKIGESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNCCVCRHALDSK---RR 179
+V+ + E + C+ICG F R + L H++ H D + K R
Sbjct: 130 VVELDASELLAEHVHFCDICGKGFRRDANLRMHMRAHG-DRFKTLDALSRPGQPKPPAGR 188
Query: 178 SALFSCRY--CHQPFIRAYCCELHQRSCAKN 92
FSC Y C++ L CA+N
Sbjct: 189 EVRFSCPYAGCNRNRAHRRFRPLKSAVCARN 219
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 316 ESD-YICNICGAAFCRPSQLSEHIQKHNL 233
ESD Y+C IC F R L H ++H +
Sbjct: 62 ESDRYVCEICNQGFQRDQNLQMHRRRHKV 90
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 316 ESD-YICNICGAAFCRPSQLSEHIQKHNL 233
ESD Y+C IC F R L H ++H +
Sbjct: 61 ESDRYVCEICNQGFQRDQNLQMHRRRHKV 89
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +1
Query: 271 ADRRLPRKYCRYNPTRRS*TAGGTEPWTNMNYSRFGACTTGFVLSSPSISSADLTNRLVL 450
ADRR P R+ +R+ A G + + YSR G +P+ S T+R
Sbjct: 488 ADRRKPSGMNRFQNNKRARGASGPQSFPPSKYSRGSNSNYGSSFRNPASHSFPYTDRAGF 547
Query: 451 YSP 459
P
Sbjct: 548 VGP 550
>08_01_0379 + 3371125-3371988
Length = 287
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 84 TPKFFAHDLWWSSQQYALMNGWWQY 158
TP F + W SSQ Y + GW ++
Sbjct: 114 TPWRFRYSYWGSSQSYVMTKGWSRF 138
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 327 LRSASRIISAIFAGQPSVGRHSSANTFRN 241
L+S + IS F G P+VG+ S NT R+
Sbjct: 310 LKSDKQAISVGFVGYPNVGKSSVINTLRS 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,943
Number of Sequences: 37544
Number of extensions: 441289
Number of successful extensions: 1305
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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