Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l23
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    44   2e-06
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    34   0.001
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     28   0.12 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.21 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.64 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    24   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   4.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 30/108 (27%), Positives = 48/108 (44%)
 Frame = -2

Query: 427 LLKISKETIRQILSYMPRIDYNSYLSMVQFPQLSKIGESDYICNICGAAFCRPSQLSEHI 248
           L  I ++T + +L        N Y S ++     K GE  Y CNICG  F  P++L+ H 
Sbjct: 54  LTNIEEKTYQCLLCQKAFDQKNLYQSHLR--SHGKEGEDPYRCNICGKTFAVPARLTRHY 111

Query: 247 QKHNLDNTRNCCVCRHALDSKRRSALFSCRYCHQPFIRAYCCELHQRS 104
           + H  +    C  C  +   K   ++   R  H    R Y C++ +R+
Sbjct: 112 RTHTGEKPYQCEYCSKSFSVKENLSVH--RRIHTK-ERPYKCDVCERA 156



 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
 Frame = -2

Query: 319 GESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNCCVC------RHALD----SKRRSAL 170
           GE  Y+C  CG  F    QL  H + H  +    C +C       H L     +     +
Sbjct: 200 GEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKV 259

Query: 169 FSCRYCHQPFIRAYCCELH 113
           + C  CH+ F      ELH
Sbjct: 260 YKCTLCHETFGSKKTMELH 278



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 319 GESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNCCVCRHALD 191
           GE  Y C  C  +F     LS H + H  +    C VC  A +
Sbjct: 116 GEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFE 158



 Score = 31.5 bits (68), Expect = 0.010
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 316 ESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNCCVC 206
           E  Y C++C  AF    +L  H++ H  +    C VC
Sbjct: 145 ERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVC 181



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 358 YLSMVQFPQLSKIGESDYICNICGAAFCRPSQLSEHIQKHN 236
           Y  +++  Q++  GE  Y C +C   F     +  HI+ H+
Sbjct: 243 YNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHS 283


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 301 CNICGAAFCRPSQLSEHIQKHNLDNTRNCCVCRHA 197
           C++CG AF RP  L  HI+ H  +   +C  C  A
Sbjct: 45  CHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRA 79



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 169 FSCRYCHQPFIRAYCCELHQRS 104
           FSC+YC + ++     ++H R+
Sbjct: 17  FSCKYCEKVYVSLGALKMHIRT 38


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = -2

Query: 562 LEEPTKDVCTEIMDSLSKDTKNRVSKKNKRCFTI 461
           L++  +D   +I ++L +DTKN++ +++K  F +
Sbjct: 174 LKQHMRDTMNKIAETLDEDTKNKLIEESKTVFIL 207


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
 Frame = -2

Query: 385 YMPRIDYNS--YLSMVQFPQLSKIGESDYICNICGAAFCRPSQLSEHIQKHNLDNTRNCC 212
           YM R +  S  Y  +V F  +S    +  +  I    F R  QLSE  ++  +    +C 
Sbjct: 265 YMSRHENVSILYADIVGFTAISSTYSASELVKILNELFARFDQLSERFEQLRIKILGDCY 324

Query: 211 VCRHALDSKRRSALFSCRYCHQPFIRA 131
            C      +R      C Y     + A
Sbjct: 325 YCISGAPIERPDHAVLCVYMGLSMVEA 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 190 SKRRSALFSCRYCHQPFIRAYCCELHQRSC 101
           S  RS  F CRY    F   +CC+     C
Sbjct: 728 STARSEQFLCRYEAHCFALCHCCDFDACDC 757


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 316 ESDYICNICGAAFCRPSQLSEHIQKHN 236
           + +Y C IC   +C  + L  HI  ++
Sbjct: 33  QEEYRCVICERVYCSRNSLMTHIYTYH 59


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 441 IGSVFTAIVKHLLFFFETLFFVSLDNESMISVHTSFVGSSKLFGREIDRD 590
           +GS +  ++  +LFF+  ++  ++     I+       SSK+FG   D +
Sbjct: 253 LGSFYIPMLV-MLFFYWRIYNAAVSTTKAINQGFRTTKSSKMFGSRFDEE 301


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 169 FSCRYCHQPFIRAYCCELHQR 107
           F C  CH+ F R +  + H R
Sbjct: 10  FECPECHKRFTRDHHLKTHMR 30


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 142 FIRAYCCELHQRSCAKNFGVRHAESNRGN 56
           F R +   LH R   +NF +  A++N  N
Sbjct: 101 FSRPFEKRLHSRLPGRNFNLLRADANSVN 129


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 285 QPSVGRHSSANTFRNIIWTTRGIAVFAGMPWILKDVQPCFHVGT 154
           Q  V RH  A  F         + +  G+ WI+ D  P F + T
Sbjct: 352 QAVVARHDEAMIF------PADVKINRGLXWIISDRMPVFLLXT 389


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -2

Query: 796 LNTSRSETFGFYKTESLMCGISSFSDVGTSKALKLNCNAGP 674
           LN+   +   F +     CG+ S SD    K +  +C   P
Sbjct: 128 LNSESKDFIDFIQKNLQCCGVHSLSDY-NDKPIPASCCNSP 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,095
Number of Sequences: 438
Number of extensions: 4503
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)