Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l21
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z93388-5|CAB60295.1|  387|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z93388-4|CAB07662.1|  456|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81571-10|CAB04621.2|  341|Caenorhabditis elegans Hypothetical p...    28   9.6  
Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z81504-5|CAB04120.2|  341|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 404 YVFNLRRVERKSTNLVYLK 460
           YVFN+ RVE +S N VYL+
Sbjct: 386 YVFNIERVEDRSLNQVYLR 404


>Z93388-5|CAB60295.1|  387|Caenorhabditis elegans Hypothetical
           protein T10C6.6b protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 385 PVRNLFGSIFTIQADILLSSLNFIFNS 305
           PV N+FGSIFT     L     F+FNS
Sbjct: 96  PVGNIFGSIFTAMVLPLGYQYTFVFNS 122


>Z93388-4|CAB07662.1|  456|Caenorhabditis elegans Hypothetical
           protein T10C6.6a protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 385 PVRNLFGSIFTIQADILLSSLNFIFNS 305
           PV N+FGSIFT     L     F+FNS
Sbjct: 165 PVGNIFGSIFTAMVLPLGYQYTFVFNS 191


>Z81571-10|CAB04621.2|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.13 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 218 YLYFLVF*LIIDFLAETRGVKLCDLFYFVYLV 123
           Y Y L +  ++ F+AE   + +C  FYF  L+
Sbjct: 47  YKYCLCYLQLVSFIAEIEMIFICPAFYFFPLI 78


>Z81571-1|CAB04610.1|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 218 YLYFLVF*LIIDFLAETRGVKLCDLFYFVYLV 123
           Y Y L +  ++ F+AE   + +C  FYF  L+
Sbjct: 47  YKYCLCYLQLVSFIAEIEMIFICPAFYFFPLI 78


>Z81504-5|CAB04120.2|  341|Caenorhabditis elegans Hypothetical
           protein M01G12.13 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 218 YLYFLVF*LIIDFLAETRGVKLCDLFYFVYLV 123
           Y Y L +  ++ F+AE   + +C  FYF  L+
Sbjct: 47  YKYCLCYLQLVSFIAEIEMIFICPAFYFFPLI 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,018
Number of Sequences: 27780
Number of extensions: 293348
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)