Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l20
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    95   2e-21
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    88   2e-19
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   0.23 
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   2.1  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   2.1  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    24   3.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   3.7  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    23   4.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   4.9  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.4  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    23   6.4  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       23   6.4  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   6.4  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    23   8.5  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 94.7 bits (225), Expect = 2e-21
 Identities = 46/69 (66%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
 Frame = -1

Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 30
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 29  LPPGLQVKE 3
           LPP L V E
Sbjct: 61  LPPDLTVTE 69


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 88.2 bits (209), Expect = 2e-19
 Identities = 43/69 (62%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
 Frame = -1

Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 30
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 29  LPPGLQVKE 3
           LPP L V E
Sbjct: 61  LPPALTVTE 69


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.9 bits (59), Expect = 0.23
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 146 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQ 12
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQ 247


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 223 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 98
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 VLLYFDRFGVFPPRLN*KVFDIFD 194
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 99  NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 209
           N+   + R L    +F VF   L+   FD+ D+ +HV
Sbjct: 14  NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 KDIKDFLIKARRKDAKSVKIKKNPEN 114
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 200 REIKDIKDFLIKARRKD 150
           R IKD+KD   KA  KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 34   CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 126
            C+ F +     ++ TR++ +L  +TL  T SGF
Sbjct: 988  CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 85  NLEHRTLNLTFSGFFFILT 141
           N E  T++ TFSGF+  LT
Sbjct: 25  NEEGETVDFTFSGFYANLT 43


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 148 PNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKL 8
           PNR+     +  + SRF  Q  C P     K  +R++    L V+ L
Sbjct: 41  PNRAIGYAQIECACSRFGLQDKCKPIYGGCKNGVRSIPIQLLDVAGL 87


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 107 FKVRCSRFLYTLVITDKEKAEKLK 36
           FK+    F  +LV+TD +K  K+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 61  SVMTRVYRNLEHRTLNLTFSGFFFILTD 144
           S+M  +  N+ H+T  L   GF   LT+
Sbjct: 253 SLMLALLSNVVHKTTGLVIGGFTLNLTN 280


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 61  SVMTRVYRNLEHRTLNLTFSGFFFIL 138
           S+ + +Y     R  NL  +GFFF+L
Sbjct: 344 SLCSGLYMKKTGRYRNLVIAGFFFML 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 988,731
Number of Sequences: 5004
Number of extensions: 16405
Number of successful extensions: 46
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)