Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l20
(254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471 102 3e-23
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528 101 1e-22
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 99 4e-22
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123... 27 2.8
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 27 2.8
08_02_1440 - 27113396-27113418,27113976-27114102 25 6.4
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253... 25 6.4
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424... 25 6.4
07_01_0578 + 4295386-4296489,4297394-4297507 25 8.4
05_05_0149 - 22733703-22736216 25 8.4
>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
Length = 69
Score = 102 bits (245), Expect = 3e-23
Identities = 46/68 (67%), Positives = 59/68 (86%)
Frame = -1
Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 27
MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60
Query: 26 PPGLQVKE 3
PPGL V+E
Sbjct: 61 PPGLTVQE 68
>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
Length = 69
Score = 101 bits (241), Expect = 1e-22
Identities = 45/68 (66%), Positives = 58/68 (85%)
Frame = -1
Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 27
MP++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60
Query: 26 PPGLQVKE 3
PPGL V+E
Sbjct: 61 PPGLTVQE 68
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 99.1 bits (236), Expect = 4e-22
Identities = 44/67 (65%), Positives = 57/67 (85%)
Frame = -1
Query: 203 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 24
P++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91
Query: 23 PGLQVKE 3
PGL V+E
Sbjct: 92 PGLTVQE 98
>05_01_0178 -
1235546-1235756,1235869-1235945,1236194-1236347,
1237067-1237216,1237363-1237484,1237806-1237910,
1237986-1238213
Length = 348
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = -1
Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 45
MP + + L+ + + +V ++ N + +V C ++L+ +I++K AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 253 LLDPLTVLVENYSSSTCRVKSKISKTF 173
+LD L V++EN SS+T +S I+ T+
Sbjct: 395 ILDALAVVLENISSTTPVARSTIAATY 421
>08_02_1440 - 27113396-27113418,27113976-27114102
Length = 49
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 56 EKAEKLKQSLPPGLQ 12
E A KLKQ LPPG Q
Sbjct: 25 ENANKLKQFLPPGSQ 39
>07_03_1600 -
28024495-28024509,28024681-28024731,28025083-28025355,
28025427-28025554,28025645-28025764,28025856-28025933,
28025993-28026061,28026183-28026213
Length = 254
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 73 WSSLTKRRLRNLSRVYLQVSKLK 5
WS LTK+ N+SRV + ++ K
Sbjct: 77 WSKLTKKVASNVSRVVVSLASFK 99
>06_01_0590 -
4240260-4240883,4241063-4242238,4242691-4242760,
4243739-4243803
Length = 644
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 185 IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 63
++ +I+A + V I P VK C++F Y +V+T
Sbjct: 55 LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 170 IKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 45
IKAR++ S + K +PE + Y +I+D + AE
Sbjct: 352 IKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAE 393
>05_05_0149 - 22733703-22736216
Length = 837
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 185 IKDFLIKARRKDAKSVKIKKN---PENVKFKVRCSRFLYTLVITDKEKAE 45
+KD I + R+ S++ K N PENV S+ T V DKE AE
Sbjct: 534 MKDEEIHSLRRMLSSLQRKMNAPAPENVDKSEETSKISTTPVTEDKEIAE 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,298,388
Number of Sequences: 37544
Number of extensions: 97882
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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