Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l20
         (254 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.     125   2e-29
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...   125   2e-29
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    72   4e-13
Y15233-1|CAA75517.1|  847|Homo sapiens liver glycogen phosphoryl...    28   4.7  
M36807-1|AAA35906.1|  366|Homo sapiens protein ( Human liver gly...    28   4.7  
M14636-1|AAA52577.1|  847|Homo sapiens PYGL protein.                   28   4.7  
BC110791-1|AAI10792.2|  847|Homo sapiens phosphorylase, glycogen...    28   4.7  
BC095850-1|AAH95850.2|  847|Homo sapiens phosphorylase, glycogen...    28   4.7  
BC082229-1|AAH82229.2|  847|Homo sapiens phosphorylase, glycogen...    28   4.7  
BC009895-1|AAH09895.3|  846|Homo sapiens phosphorylase, glycogen...    28   4.7  
AF066858-1|AAC17450.1|  847|Homo sapiens liver glycogen phosphor...    28   4.7  
AF046798-1|AAC18079.1|  847|Homo sapiens glycogen phosphorylase ...    28   4.7  
AF046785-1|AAC23504.1|  847|Homo sapiens liver glycogen phosphor...    28   4.7  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score =  125 bits (302), Expect = 2e-29
 Identities = 59/68 (86%), Positives = 65/68 (95%)
 Frame = -1

Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 27
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 26  PPGLQVKE 3
           PPGL VKE
Sbjct: 61  PPGLAVKE 68


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score =  125 bits (302), Expect = 2e-29
 Identities = 59/68 (86%), Positives = 65/68 (95%)
 Frame = -1

Query: 206 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 27
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 26  PPGLQVKE 3
           PPGL VKE
Sbjct: 61  PPGLAVKE 68


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = -1

Query: 107 FKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 3
           FKVRCSR+LYTLVITDKEKAEKLKQSLPPGL VKE
Sbjct: 1   FKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 35


>Y15233-1|CAA75517.1|  847|Homo sapiens liver glycogen phosphorylase
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>M36807-1|AAA35906.1|  366|Homo sapiens protein ( Human liver
           glycogen phosphorylase type IV mRNA, 3' end. ).
          Length = 366

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 258 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 294


>M14636-1|AAA52577.1|  847|Homo sapiens PYGL protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC110791-1|AAI10792.2|  847|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC095850-1|AAH95850.2|  847|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC082229-1|AAH82229.2|  847|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>BC009895-1|AAH09895.3|  846|Homo sapiens phosphorylase, glycogen;
           liver (Hers disease, glycogen storage disease type VI)
           protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 738 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 774


>AF066858-1|AAC17450.1|  847|Homo sapiens liver glycogen
           phosphorylase protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>AF046798-1|AAC18079.1|  847|Homo sapiens glycogen phosphorylase
           protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


>AF046785-1|AAC23504.1|  847|Homo sapiens liver glycogen
           phosphorylase protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 45  LSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRFGVF 155
           L L+    D G   P   +L  DI+ +L Y DRF VF
Sbjct: 739 LKLVIDQIDNGFFSPKQPDLFKDIINMLFYHDRFKVF 775


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,082,476
Number of Sequences: 237096
Number of extensions: 537972
Number of successful extensions: 1306
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 76,859,062
effective HSP length: 62
effective length of database: 62,159,110
effective search space used: 1367500420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)