Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l18
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838...    29   1.7  
12_01_0002 - 4477-6144,6571-7440                                       27   3.9  
11_01_0003 - 6099-7766,8193-9062                                       27   3.9  
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297...    27   5.2  
12_01_0231 + 1744323-1745276,1745516-1746193                           27   6.9  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           27   6.9  
07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705     27   6.9  
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730...    26   9.1  
06_03_0169 - 17457929-17457988,17458086-17458192,17458383-174584...    26   9.1  

>10_08_0491 -
           18283404-18283482,18283590-18283658,18283767-18283883,
           18283953-18284068,18284149-18284223,18284248-18284430,
           18284530-18284591,18284668-18285606,18285723-18285846,
           18285917-18286060,18286151-18286225,18286359-18286382,
           18287025-18287095,18287305-18287407,18287555-18287781,
           18287910-18288027,18288220-18288311,18288793-18288874
          Length = 899

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 157 CLCTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSIF 264
           C C   P+  +VLE  SY RH+  AL  I+  +  F
Sbjct: 794 CTCVL-PLASSVLEKSSYDRHLKVALEMILKLVKSF 828


>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 207 IWASHRSGFDEYCLLFKHILTLNVFAVKVFFALKIVALSI-LGNL 338
           +W +HR+G  E  L    ++ L+ FAV V  +   VA  I LG +
Sbjct: 116 LWLAHRTGAGESVLATTAVVALSTFAVAVAGSAGTVAKRIALGQI 160


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 207 IWASHRSGFDEYCLLFKHILTLNVFAVKVFFALKIVALSI-LGNL 338
           +W +HR+G  E  L    ++ L+ FAV V  +   VA  I LG +
Sbjct: 116 LWLAHRTGAGESVLATTAVVALSTFAVAVAGSAGTVAKRIALGQI 160


>05_01_0378 +
           2970528-2971008,2971961-2972036,2972108-2972253,
           2972300-2972817
          Length = 406

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 260 YFNP*RICSKGFFRS*NCCSKHFRKFIISFD*FLRFDA 373
           YFN   +  +G+F S  C S  FR F ++ D  LR+ A
Sbjct: 263 YFNNIMLPQEGYFHSVICNSLEFRNFTVNND--LRYKA 298


>12_01_0231 + 1744323-1745276,1745516-1746193
          Length = 543

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   ILTFLQPXSLGGPGWAGGEKFKYKLSVYIIMPNEKANQATPITR 134
           ++TF  P  + G      EKF  +  VY   P++ A +  P+ R
Sbjct: 363 LITFYLPRLIAGKPMKDTEKFICRADVYGSEPSDLAGKFAPVPR 406


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 172  PWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPG 38
            P+ K +   + K  V+ + W+AF+F   + T  LY+N      PG
Sbjct: 884  PFAKGILGKHGKTPVVVLVWWAFTF---VITAVLYINIPHIHGPG 925


>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
          Length = 835

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +1

Query: 67  STNFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIV 246
           S N P ++ CR+R   +   +    Y   A       ++  +  +H    HI +  +  V
Sbjct: 568 SRNCPLLAGCRLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYV 627

Query: 247 SYL 255
           +YL
Sbjct: 628 AYL 630


>12_02_1099 -
           26072301-26072468,26072642-26072751,26072966-26073014,
           26073081-26073495,26073604-26074019
          Length = 385

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 223 RCDAHMNELPVPCGPWEPWYKD 158
           RCDA  +  P+P  P   W +D
Sbjct: 340 RCDADADYFPMPTSPHSDWSED 361


>06_03_0169 -
           17457929-17457988,17458086-17458192,17458383-17458499,
           17458630-17458702
          Length = 118

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 196 PVPCGPWEPWYK-DMQSYYNKVLVIGVAW 113
           PVP GP   WY+  +QS    V   GV W
Sbjct: 83  PVPSGPNAGWYRLQIQSSTKGVPEYGVGW 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,390,194
Number of Sequences: 37544
Number of extensions: 197712
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)