Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l18
(388 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98657-1|CAA67226.1| 481|Homo sapiens lipopolysaccharide bindin... 29 6.9
M35533-1|AAA59493.1| 477|Homo sapiens LBP protein. 29 6.9
BC022256-1|AAH22256.1| 477|Homo sapiens LBP protein protein. 29 6.9
AL080249-1|CAC10462.1| 481|Homo sapiens lipopolysaccharide bind... 29 6.9
AF105067-1|AAD21962.1| 481|Homo sapiens lipopolysaccharide-bind... 29 6.9
AF013512-1|AAC39547.1| 481|Homo sapiens lipopolysaccharide bind... 29 6.9
M69043-1|AAA16489.1| 317|Homo sapiens MAD3 protein. 28 9.1
BT007091-1|AAP35754.1| 317|Homo sapiens nuclear factor of kappa... 28 9.1
BC004983-1|AAH04983.1| 317|Homo sapiens nuclear factor of kappa... 28 9.1
BC002601-1|AAH02601.1| 317|Homo sapiens nuclear factor of kappa... 28 9.1
AY496422-1|AAR29599.1| 317|Homo sapiens nuclear factor of kappa... 28 9.1
AY033600-1|AAK51149.1| 317|Homo sapiens NFKBIA protein. 28 9.1
AJ249294-1|CAB65556.2| 317|Homo sapiens IkBa protein. 28 9.1
>X98657-1|CAA67226.1| 481|Homo sapiens lipopolysaccharide binding
protein protein.
Length = 481
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 145 YNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPP 32
+NK++ ++ + F+ ++Y E YLNFS PP
Sbjct: 273 HNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPP 310
>M35533-1|AAA59493.1| 477|Homo sapiens LBP protein.
Length = 477
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 145 YNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPP 32
+NK++ ++ + F+ ++Y E YLNFS PP
Sbjct: 269 HNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPP 306
>BC022256-1|AAH22256.1| 477|Homo sapiens LBP protein protein.
Length = 477
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 145 YNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPP 32
+NK++ ++ + F+ ++Y E YLNFS PP
Sbjct: 273 HNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPP 310
>AL080249-1|CAC10462.1| 481|Homo sapiens lipopolysaccharide binding
protein protein.
Length = 481
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 145 YNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPP 32
+NK++ ++ + F+ ++Y E YLNFS PP
Sbjct: 273 HNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPP 310
>AF105067-1|AAD21962.1| 481|Homo sapiens lipopolysaccharide-binding
protein protein.
Length = 481
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 145 YNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPP 32
+NK++ ++ + F+ ++Y E YLNFS PP
Sbjct: 273 HNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPP 310
>AF013512-1|AAC39547.1| 481|Homo sapiens lipopolysaccharide binding
protein protein.
Length = 481
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 145 YNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPP 32
+NK++ ++ + F+ ++Y E YLNFS PP
Sbjct: 273 HNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPP 310
>M69043-1|AAA16489.1| 317|Homo sapiens MAD3 protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
>BT007091-1|AAP35754.1| 317|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells inhibitor, a
protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
>BC004983-1|AAH04983.1| 317|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells inhibitor, a
protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
>BC002601-1|AAH02601.1| 317|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells inhibitor, a
protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
>AY496422-1|AAR29599.1| 317|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells inhibitor, a
protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
>AY033600-1|AAK51149.1| 317|Homo sapiens NFKBIA protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
>AJ249294-1|CAB65556.2| 317|Homo sapiens IkBa protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 163 CTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSI 261
CTT P +H++L+A +Y H L +I YL I
Sbjct: 167 CTT-PHLHSILKATNYNGHTCLHLASIHGYLGI 198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,362,897
Number of Sequences: 237096
Number of extensions: 1099959
Number of successful extensions: 3603
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2641190740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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