Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l18
(388 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003389-7|AAC71133.1| 96|Caenorhabditis elegans Bmp receptor ... 33 0.053
Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 31 0.37
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 28 2.0
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 28 2.0
U64848-8|ABS83847.1| 408|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z81561-3|CAB04553.2| 350|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 27 4.6
Z54342-14|CAA91151.2| 107|Caenorhabditis elegans Hypothetical p... 27 4.6
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical pr... 27 4.6
AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear recep... 27 4.6
AL032652-11|CAA21712.2| 350|Caenorhabditis elegans Hypothetical... 27 4.6
AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormo... 27 4.6
Z54342-7|CAA91149.1| 460|Caenorhabditis elegans Hypothetical pr... 27 6.1
U56961-3|AAK39294.1| 634|Caenorhabditis elegans Hypothetical pr... 27 6.1
AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 27 6.1
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 27 6.1
Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical pr... 26 8.1
>AF003389-7|AAC71133.1| 96|Caenorhabditis elegans Bmp receptor
associated proteinfamily protein 2 protein.
Length = 96
Score = 33.5 bits (73), Expect = 0.053
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 199 LPVPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYT 80
+PVP ++ Y ++Q +N L + +FA SF IYT
Sbjct: 38 MPVPFQSYKKVYGELQGKFNTYLAVSAVFFASSFATAIYT 77
>Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical
protein ZK938.6 protein.
Length = 460
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 103 RKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIVSYL 255
R+ T+ + +PC A L +AP+ +++ E RH A++N++ L
Sbjct: 24 RQPTQWKHLAKPCLILIAILVLSAPVAYSLSELIMVARHKSPAVSNLIELL 74
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 30.7 bits (66), Expect = 0.37
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 67 STNFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTAP 177
S+NFP I + +QTK Q P+ C S A CT P
Sbjct: 157 SSNFPPIKVV-VNQQTKASQCPQACAQSCANSCTAQP 192
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 216 SHRSGFDE-YCLLFKHILTLNVFAVKVFFALKIV 314
SH +G E +C+ ++L F V VF +KIV
Sbjct: 34 SHDAGCTEMFCIAMSYVLIFLTFPVSVFMCIKIV 67
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 216 SHRSGFDE-YCLLFKHILTLNVFAVKVFFALKIV 314
SH +G E +C+ ++L F V VF +KIV
Sbjct: 34 SHDAGCTEMFCIAMSYVLIFLTFPVSVFMCIKIV 67
>U64848-8|ABS83847.1| 408|Caenorhabditis elegans Hypothetical
protein C50E3.16 protein.
Length = 408
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 42 GWAGGEKFKYKLSVYIIMPNEKANQATPITRTLL 143
GWA + Y +Y+ +P E AT TR L
Sbjct: 82 GWATATEIAYFAYIYVKVPKEDYKSATAYTRAAL 115
>Z81561-3|CAB04553.2| 350|Caenorhabditis elegans Hypothetical
protein Y63D3A.8 protein.
Length = 350
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 246 LLFKHILTLNVFAVKVFF--ALKIVALSILGNL 338
LLF H++ L+ FAV +FF L +V +L L
Sbjct: 176 LLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMEL 208
>Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical
protein C08H9.4b protein.
Length = 465
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 112 TKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIV 246
T+ + +PC+ A L +AP+ +++ E RH ++N++
Sbjct: 24 TQWKHLVKPCFILIAILVFSAPVAYSLSELIMIARHKSPTVSNLI 68
>Z54342-14|CAA91151.2| 107|Caenorhabditis elegans Hypothetical
protein C08H9.4a protein.
Length = 107
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +1
Query: 112 TKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIV 246
T+ + +PC+ A L +AP+ +++ E RH ++N++
Sbjct: 24 TQWKHLVKPCFILIAILVFSAPVAYSLSELIMIARHKSPTVSNLI 68
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 107 FLIRHDDIHGKFVLKFLATSPTRS 36
FLI+ +D G+F+ +FLA P RS
Sbjct: 602 FLIKCNDDSGEFLTEFLAQLPVRS 625
>Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical
protein F19C6.2a protein.
Length = 495
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 337 KFPKMLRATILRAKKTFTANTLRVKICLNKRQYSSKPDRCDAHMNELPVP 188
KFPK + ILRA T N L V L+++ +SS+ H + VP
Sbjct: 135 KFPKRSQIDILRAVPNETRNIL-VTESLSEKLHSSESRNFGMHNTSVNVP 183
>AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear receptor
NHR-106 protein.
Length = 382
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 61 NLSTNFPCISSCRMRKQTKQRQSPE 135
N + FP SCRMRK K PE
Sbjct: 50 NFTGKFPQCKSCRMRKCIKMGMMPE 74
>AL032652-11|CAA21712.2| 350|Caenorhabditis elegans Hypothetical
protein Y63D3A.8 protein.
Length = 350
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 246 LLFKHILTLNVFAVKVFF--ALKIVALSILGNL 338
LLF H++ L+ FAV +FF L +V +L L
Sbjct: 176 LLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMEL 208
>AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 106 protein.
Length = 382
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 61 NLSTNFPCISSCRMRKQTKQRQSPE 135
N + FP SCRMRK K PE
Sbjct: 50 NFTGKFPQCKSCRMRKCIKMGMMPE 74
>Z54342-7|CAA91149.1| 460|Caenorhabditis elegans Hypothetical
protein C08H9.12 protein.
Length = 460
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 67 STNFPCISSCRMRKQTKQ----RQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQAL 234
ST+ P + + ++T + + PC A L +AP+ ++ E RH + +
Sbjct: 8 STSIPLLRIQNITRKTNRFAQWKNLINPCLILIAILVISAPVAFSLSELIMVARHKSETV 67
Query: 235 TNIVSYL 255
+N+++ L
Sbjct: 68 SNLINML 74
>U56961-3|AAK39294.1| 634|Caenorhabditis elegans Hypothetical
protein T19D7.4 protein.
Length = 634
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 115 KQRQSPEPCYNSFACLCTT-APMVHTVLEA-HSYGRHI 222
+ RQ E CYNS++ + T ++T+LE H Y H+
Sbjct: 581 RTRQVVEMCYNSWSYVARTGCEELYTLLEGLHKYSIHL 618
>AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical
protein F37B4.7 protein.
Length = 424
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 42 GWAGGEKFKYKLSVYIIMPNEKANQATPITRTLL 143
GWA + Y +Y+ +P + AT TR L
Sbjct: 104 GWATATEIAYFAYIYVKVPKTEYKSATAFTRAAL 137
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 55 PPAQPGPPSXHG 20
PP +PGPP HG
Sbjct: 211 PPGEPGPPGAHG 222
>Z68104-2|CAA92113.1| 359|Caenorhabditis elegans Hypothetical
protein F08B12.2 protein.
Length = 359
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 175 PMVHTVLEAHSYGRHIDQALTNIVSYLSIF*PLTYL 282
P V ++ + I AL ++V YL+ F P T+L
Sbjct: 23 PSVFDIIAQENLATSIRPALQHLVKYLAFFKPKTFL 58
>Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical
protein C08H9.11 protein.
Length = 459
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 67 STNFPCISSCRMRKQT----KQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQAL 234
STN P + + ++ ++ + + +PC A L +AP+ +++ E RH + +
Sbjct: 8 STNAPLLENQQITRRISCLIQWKHLIKPCLILIAILVFSAPVAYSLSELIMVARHKSETV 67
Query: 235 TNIV 246
+N++
Sbjct: 68 SNLI 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,690
Number of Sequences: 27780
Number of extensions: 176345
Number of successful extensions: 634
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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