Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l18
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   6.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   6.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   6.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   6.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   6.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 157 MQSYYNKVLVIGVAWFAFSFGM 92
           +Q++    LV+ ++WF+F  G+
Sbjct: 204 IQTFAPSTLVVMLSWFSFWLGL 225


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 247 RQYSSKPDRCDAHMNELPVPCGPWEPWYKDMQSYYNKVLVIGVAW 113
           R+Y  + +  D  + E P+   P  P+ +D+    N +     AW
Sbjct: 296 REYDRELEDFDGRLFEFPIKFVPSYPFEEDINEGSNYMQTRVPAW 340


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = -1

Query: 94   MMIYTESLYLNFSPPAQP 41
            +++ +ES+ +++ PP+QP
Sbjct: 1189 LVMSSESILVSWRPPSQP 1206


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 205 NELPVPCGPW 176
           N LP P GPW
Sbjct: 125 NFLPRPMGPW 134


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 205 NELPVPCGPW 176
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 205 NELPVPCGPW 176
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 205 NELPVPCGPW 176
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 205 NELPVPCGPW 176
           N LP P GPW
Sbjct: 128 NFLPRPMGPW 137


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 166 YKDMQSYYNKVLVIGVAWFAF 104
           Y   Q+Y   +L++ ++W +F
Sbjct: 243 YFVFQTYLPSILIVMLSWVSF 263


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
          kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 76 SLYLNFSPPAQPGPPS 29
          SL L F P   PGP S
Sbjct: 47 SLKLAFEPRRNPGPGS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,038
Number of Sequences: 438
Number of extensions: 2220
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)