Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l13
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 36 0.027
07_01_0161 + 1132505-1132704,1132839-1134075 30 2.4
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 30 2.4
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200... 29 5.4
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 29 5.4
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 7.2
01_06_0751 + 31690411-31690443,31692900-31694240 28 7.2
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 9.5
06_01_0136 + 1043888-1044487 28 9.5
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 36.3 bits (80), Expect = 0.027
Identities = 28/103 (27%), Positives = 49/103 (47%)
Frame = -1
Query: 376 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 197
M+ A I + TD ++ + K +K D+ + +D K + +E DE+++++ C
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199
Query: 196 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKG 68
P +H TKS ++ + D S T S QRF+ G G
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRFERFANGAG 241
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = -1
Query: 376 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 197
M+ A I + TD ++ + K +K D+ + ++ K + +E DE+++++ C
Sbjct: 121 MEAALEISSRWPPVTDASL-LRWRKKLKRTSDECSQVMER-CKRRAMEDDEMEQEVRQCA 178
Query: 196 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKG 74
P +H T+S ++ + D S T S Q+F+ G
Sbjct: 179 FPKRIAHATRSFLSSFTGQKKVD-SLITTSTIQKFERLADG 218
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = -1
Query: 724 ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 545
AT G+++ A +A+ L AT + M S + L E Q D + + T V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174
Query: 544 KDVKLEN 524
KD +L+N
Sbjct: 175 KDEELQN 181
>08_02_0665 +
19818500-19819013,19819169-19819260,19819435-19820056,
19820575-19820775,19821327-19821395,19821428-19821522,
19821608-19822153
Length = 712
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 18 IQ*RSRTRSTKSFLPAIPFPFPVSSKRCLCEPVYLLVSVNRSTAAAAA 161
+Q S S + P++ FP +SS C P L S +T AAA+
Sbjct: 227 VQQASLASSIAPYAPSLTFPNSLSSLHCHTPPSCLPASATTTTMAAAS 274
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -1
Query: 187 ITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKGI---AGRKDLVXRVRL 29
+ + V +P +AAA RL S+ G ++ + GKGK + A R D+V R ++
Sbjct: 44 VAASVATAPESAAAQGRLESLSQVAGVLGTQWGDEGKGKLVDILAQRFDIVARCQV 99
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 422 QVRWKSHHALAKRQMDEASQSH*WKENNNNGHGHSLQKTQIGKTR 288
++RWK K++ ++A S ENNN H K Q R
Sbjct: 1006 KLRWKGQKMSKKKEDEDAELSRLKAENNNAEEAHGDAKRQFDSIR 1050
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -1
Query: 328 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 149
TAI F ++ +LG D K +D L +N K +DE+ + P S T+ P
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217
Query: 148 AVDRLTDTS 122
A ++ T TS
Sbjct: 218 ATEQATSTS 226
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 604 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 497
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
>06_01_0136 + 1043888-1044487
Length = 199
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 96 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 179
R C VY +V+ N+S AAAA+ + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,135,513
Number of Sequences: 37544
Number of extensions: 443295
Number of successful extensions: 1348
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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