Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l12
         (849 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1796|AAF48189.3| 1470|Drosophila melanogaster CG17762-P...    30   4.6  
AE014298-1795|AAF48187.3| 1470|Drosophila melanogaster CG17762-P...    30   4.6  
AE014298-1794|AAF48188.3| 1173|Drosophila melanogaster CG17762-P...    30   4.6  
AE014298-1793|AAF48190.3| 1173|Drosophila melanogaster CG17762-P...    30   4.6  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    30   4.6  

>AE014298-1796|AAF48189.3| 1470|Drosophila melanogaster CG17762-PD,
           isoform D protein.
          Length = 1470

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 695 SSYPTRCEESP-TCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSKEF 555
           S YP    ESP TC   L  CP  +V    +  +T   + SC   +E+
Sbjct: 380 SPYPMDLHESPVTCCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREW 427


>AE014298-1795|AAF48187.3| 1470|Drosophila melanogaster CG17762-PC,
           isoform C protein.
          Length = 1470

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 695 SSYPTRCEESP-TCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSKEF 555
           S YP    ESP TC   L  CP  +V    +  +T   + SC   +E+
Sbjct: 380 SPYPMDLHESPVTCCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREW 427


>AE014298-1794|AAF48188.3| 1173|Drosophila melanogaster CG17762-PB,
           isoform B protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 695 SSYPTRCEESP-TCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSKEF 555
           S YP    ESP TC   L  CP  +V    +  +T   + SC   +E+
Sbjct: 380 SPYPMDLHESPVTCCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREW 427


>AE014298-1793|AAF48190.3| 1173|Drosophila melanogaster CG17762-PA,
           isoform A protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 695 SSYPTRCEESP-TCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSKEF 555
           S YP    ESP TC   L  CP  +V    +  +T   + SC   +E+
Sbjct: 380 SPYPMDLHESPVTCCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREW 427


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 218   CYHYERKKPLSTHNACAP----PHSSCQLCASSPEC 123
             CY  ERK P +  N C P    P+S C++   +  C
Sbjct: 12715 CYQEERKPPTTPDNPCQPSPCGPNSECKVLNGNAAC 12750


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,496,928
Number of Sequences: 53049
Number of extensions: 723989
Number of successful extensions: 2750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2728
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)