Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l08
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine rece...    28   7.5  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 730 KYFCTDDFLCSSDILNLFHNILFLTKGPKYIYFAMV 623
           KY CT   +   DI  L H+I+  TKG +Y Y+  +
Sbjct: 234 KYLCTSR-IAQMDITTLRHDIIAATKGKEYKYYTHI 268


>U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein213 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 871 YVFQYLLGLSIGNVIPRTTSSSTIQ*ARNFKQIFLT 764
           ++F Y+    +G  I RT S  T++  + F++ FLT
Sbjct: 211 WIFAYVTDRLLGQQINRTMSKRTVELHKKFQKAFLT 246


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 166 AIRIFSTLKLLHY*LKLATVCVYVCHKFRSGLNKSSL 56
           ++RIFS L  + Y      + +Y C+ FR GLN  +L
Sbjct: 545 SVRIFSGLIFVVY----LAIAMYGCYNFREGLNPGNL 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,449,824
Number of Sequences: 27780
Number of extensions: 369946
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)