Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l02
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 58 1e-08
11_01_0038 - 284152-284202,285014-285091,285215-285218,285669-28... 45 6e-05
12_01_0036 - 299140-299190,300001-300078,300202-300205,300657-30... 43 2e-04
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 34 0.15
09_03_0093 + 12311123-12311446,12312260-12312624,12312735-123130... 30 1.9
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 30 1.9
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 30 2.5
05_03_0624 - 16319364-16320581 26 3.0
05_03_0599 + 16026042-16027259 26 3.0
05_05_0220 + 23380290-23381581,23381997-23383458 29 3.2
06_02_0188 - 12810330-12811874 29 4.3
03_06_0468 + 34153425-34153823 29 4.3
03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069 29 4.3
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78... 29 4.3
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 28 7.5
05_01_0192 + 1394342-1396645 28 7.5
09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666 28 9.9
09_01_0152 - 2260314-2260694 28 9.9
05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570... 28 9.9
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996... 28 9.9
>05_05_0174 - 22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 57.6 bits (133), Expect = 1e-08
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 37/270 (13%)
Frame = -3
Query: 792 KHNLQWEGLVRETAALSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFS 613
+H+L + R S+ +S +R G + S L++ +D R+ + P++G +
Sbjct: 246 QHDLSYNLTWRTLTDPSQVSSKSIRRQLGHNLLSALKYTYKIDQRNSHLRPTKGYAFLST 305
Query: 612 SELAGL--GGGVAHLKTELQAQQNYEL-IEDIVLQLAGAAGVLHDM------FGTEIPDH 460
S++ GL G+ + E + L + L + G + + + +PD
Sbjct: 306 SQVGGLWDSKGLRFFRQEFDVRGAVPLGFYNSALNVGLGVGAILPLGRGFMNLSSSVPDR 365
Query: 459 FFLGGPTT----------LRGFQQRGVGP----------HSDGQATG-GKVYWAAGAHV- 346
F+LGG ++ L GF+ RG+GP DG A G+ Y V
Sbjct: 366 FYLGGHSSPVCSLSGLSSLLGFRTRGIGPTEPRRLVPSESEDGSAASPGRDYLGGDLAVS 425
Query: 345 -YAPLPF-LRNKNGISSLFRSHFFVNAGCLAAPDNG----LTNWEWANSARVSCGAGVAL 184
+A L F L K + H F+ AG LA G + E+ + R S G G+ L
Sbjct: 426 AFADLSFDLPLKIFRDAGIHGHAFLTAGNLAKLSEGEYKKFSLSEFGRTFRSSAGVGIIL 485
Query: 183 RLGSVARLELNYCAPLKARTNDCTAHGLQF 94
+ R+E+NYC LK +D G+QF
Sbjct: 486 PT-KLFRVEVNYCYILKQAEHDSGRTGIQF 514
>11_01_0038 -
284152-284202,285014-285091,285215-285218,285669-285769,
286642-287151,287550-288032,288668-289156
Length = 571
Score = 45.2 bits (102), Expect = 6e-05
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Frame = -3
Query: 789 HNLQWEGLVRETAALSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSS 610
+NL W + + A +S + +R G + S +++ VD RD I P++G FSS
Sbjct: 252 YNLSWR-TITDRALMSSNS---IRGQLGHSLLSSIKYAYKVDQRDSRIRPTRGYAYLFSS 307
Query: 609 ELAGLGG---GVAHLKTELQAQQNYEL-IEDIVLQLAGAAGVLHDMF----GTEIP--DH 460
++ GL +++ EL + L + + L AAG++H + G+ P +
Sbjct: 308 QVGGLAPESKDARYIRQELDLRVALPLGVLNGALNAGVAAGIIHPLARGSTGSISPLSEQ 367
Query: 459 FFLGG----------PTTLRGFQQRGVG 406
F+LGG P++L GF++RG+G
Sbjct: 368 FYLGGNRSLMCRLGGPSSLLGFKKRGLG 395
>12_01_0036 -
299140-299190,300001-300078,300202-300205,300657-300757,
301636-302145,302552-303034,303672-304163
Length = 572
Score = 43.2 bits (97), Expect = 2e-04
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Frame = -3
Query: 789 HNLQWEGLVRETAALSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSS 610
+NL W + + A +S + +R G + S +++ VD RD I P++G FSS
Sbjct: 253 YNLSWR-TITDRALMSSNS---IRGQLGHSLLSSIKYAYKVDQRDSRIRPTRGYAYLFSS 308
Query: 609 ELAGLGG---GVAHLKTELQAQQNYEL-IEDIVLQLAGAAGVLHDMF----GTEIP--DH 460
++ GL +++ E+ + L + + + AAG++H + G+ P +
Sbjct: 309 QVGGLAPESKDARYIRQEIDLRVALPLGVLNGAVNAGVAAGIIHPLARGSTGSISPLSEQ 368
Query: 459 FFLGG----------PTTLRGFQQRGVG 406
F+LGG P++L GF++RG+G
Sbjct: 369 FYLGGNRSLMCRLGGPSSLLGFKKRGLG 396
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 33.9 bits (74), Expect = 0.15
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Frame = +2
Query: 374 FPPVACPSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS*FC 553
FP CP+ GP+ C P S G R IS SCRTP APA+ + SS
Sbjct: 56 FPCSRCPT--GPSTACQTPPS--GGCRS----ISTATSSCRTPRAPAASGSSSS------ 101
Query: 554 CAWSSVLRW--ATPP-----PNPASSLLNCTQEP*LGKIASSRWSTVTMCR 685
A ++ RW PP P P L+ C+ + + R S + +CR
Sbjct: 102 -AATARTRWMPTDPPVTHDTPPPLQKLVVCSPTL-VAAVVGKRPSQLLLCR 150
>09_03_0093 +
12311123-12311446,12312260-12312624,12312735-12313004,
12313100-12313664
Length = 507
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = -3
Query: 675 VTVDHRDDAIFPSQGSWVQFSSELAGLGGGVAHL---KTELQAQQNYELIEDIVLQLAGA 505
+ D DD + W+Q +S + + GG + L T + + + + +V ++ A
Sbjct: 130 LVADSTDDGNRGAAFGWLQLTSSIGSIIGGFSALLLASTTVLGVEGWRVAFHLVAAISVA 189
Query: 504 AGVLHDMFGTEIPDHFFLGGPTTLRGFQQRG 412
GVL +F + HF G P G +RG
Sbjct: 190 VGVLVWLFA--VDPHFPAGAPGDGGGGGRRG 218
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/73 (34%), Positives = 31/73 (42%)
Frame = +2
Query: 377 PPVACPSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS*FCC 556
PP PS P C PLS PP + G+ V P AP +S + F
Sbjct: 88 PPTIFPSP-PPARHCSTPLSPSSPPFQP-RGLLV---RWAPPPAPRCSTPLSPYSPPFRP 142
Query: 557 AWSSVLRWATPPP 595
A ++RWA PPP
Sbjct: 143 A-RLIVRWARPPP 154
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 127 PGLQRRAVV-QLEPRHAAQPQRDAGAARHARGIRPFPIR*TIIGRRQTAGVHEEMRPEQG 303
PG+ R + +L R A+P R R A G + F IR + + + E + PE
Sbjct: 683 PGVPREVIEHRLAVRPGARPVRQK-VRRQAPGRQAF-IREEVARLLEAGFIREVIHPEWL 740
Query: 304 RNPVFVPKEGQR 339
NPV VPK +
Sbjct: 741 ANPVVVPKANSK 752
>05_03_0624 - 16319364-16320581
Length = 405
Score = 26.2 bits (55), Expect(2) = 3.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 377 PPVACPSECGPTPRCWKPLSVVGPP 451
PP PS P PRC PLS PP
Sbjct: 201 PPSILPSLL-PAPRCSTPLSPSSPP 224
Score = 21.8 bits (44), Expect(2) = 3.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 569 VLRWATPPP 595
++RWA PPP
Sbjct: 231 IVRWARPPP 239
>05_03_0599 + 16026042-16027259
Length = 405
Score = 26.2 bits (55), Expect(2) = 3.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 377 PPVACPSECGPTPRCWKPLSVVGPP 451
PP PS P PRC PLS PP
Sbjct: 201 PPSILPSLL-PAPRCSTPLSPSSPP 224
Score = 21.8 bits (44), Expect(2) = 3.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 569 VLRWATPPP 595
++RWA PPP
Sbjct: 231 IVRWARPPP 239
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 428 PLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSIN 541
PL PPR + +S ++S PAA ASC ++ S+N
Sbjct: 107 PLPDALPPRARALDLSANSLSGYLPAALASCGSLVSLN 144
>06_02_0188 - 12810330-12811874
Length = 514
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +1
Query: 115 AVVGPGLQRRAVVQLEPRHAAQPQRDAGAARHARGIRPFPIR*TIIGRRQTAGVH 279
A +GP V P H A QR A A RG+ P + T GR ++ H
Sbjct: 76 APLGPSRPTIFVAARGPAHRALVQRGAAFASRPRGVSPASVLLTSGGRNVSSAQH 130
>03_06_0468 + 34153425-34153823
Length = 132
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 77 KCTPSPNWRPCAVQSLVRAFSGAQ*FSSSRATLPSRSATPAPHDTRA 217
+C P R C L GA+ S+ A PS +A AP D A
Sbjct: 78 QCRPEHGHRACHTTPLTNVAGGARIRPSATAAPPSAAAVAAPADDTA 124
>03_01_0467 + 3608250-3608541,3609276-3609356,3609909-3610069
Length = 177
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 383 VACPSECGPT----PRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS 544
+A PS CG T C + L + PP K + I P +PAAPA N+ ++ +S
Sbjct: 80 LALPSACGATHANVSHCPQLLHI--PPNSKDAAIFSPGGDKGSPAAPAKDNSTTTTDS 135
>02_01_0106 -
780984-781279,781355-781578,781684-781920,782023-782126
Length = 286
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +2
Query: 407 PTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS*FCCAWSSVLRWAT 586
PT R K + V+ PP GIS+ + R C+ + N C +S W++
Sbjct: 48 PTTRSLKIMQVIEPPCSSREGISIETLDKRL-FLLGGCSWLKDANDEVFCYDASSNCWSS 106
Query: 587 PPPNPAS 607
P P +
Sbjct: 107 VAPMPTA 113
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 76 EVHSEPELEAVRGAVVGPGLQRRAVVQLEPRHAAQPQRDAGAARHARGIRPFP 234
EV S+ L+ +R VVG G + VV + D A HARG++ P
Sbjct: 276 EVTSDEHLDYMREYVVGVGPWKDTVVPPTTDNKLAAPTDLVARAHARGLQVHP 328
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 377 PPVACPSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCNTMSSINS 544
PP A S P P P+ + PP+ +P +S TP+ PAS +M NS
Sbjct: 268 PPEAPVSSAAPPPASLNPM-LPSPPQ-------LPGVSTTTPSPPASTVSMPPTNS 315
>09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666
Length = 567
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 747 LSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSSELAGLGGGVA 580
++K T+ E+ GP K +L +H S W+ F+S L G+G G+A
Sbjct: 291 VAKATAAAAAEARGPGEKPVLGE----EHTIAQALMSLDFWLMFASFLMGVGTGLA 342
>09_01_0152 - 2260314-2260694
Length = 126
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 477 TEIPDHFFLGGPTTLRGFQQRGVGPHSDGQATGGKVYWAAGAHVYAP 337
T + DH LG + R + G G A G WAAG+ V P
Sbjct: 54 TSVTDHADLGAAGSWRRRELGGARRRRAGAADGDTGLWAAGSGVGGP 100
>05_02_0024 -
5702501-5702664,5703219-5703393,5703716-5704099,
5705787-5705864,5706015-5706140
Length = 308
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 389 CPSECGPTPRCWKPLSVVGPP 451
CPS CG P C KP +VG P
Sbjct: 30 CPS-CGHDPDCNKPFDMVGMP 49
>02_05_0563 +
29998291-29998753,29999256-29999468,29999550-29999667,
30000227-30000355,30000438-30000810,30000890-30001147,
30001192-30001227
Length = 529
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 777 WEGLVRETAALSKTTSFKVRESSGPQMKS---ILRHIVTVDHRDDAIF 643
WEG E L+ +T ESS PQ + + ++T+ DD ++
Sbjct: 64 WEGPTLEVEKLASSTDVDAGESSQPQQPASVCVQEMVITMVSADDCVY 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,189,639
Number of Sequences: 37544
Number of extensions: 528187
Number of successful extensions: 1852
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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