Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l02
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon g... 103 2e-22
AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein. 103 2e-22
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.2
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 29 2.9
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 29 3.9
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 3.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.1
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 5.1
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 28 6.7
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 28 6.7
U97013-1|AAB52340.2| 270|Caenorhabditis elegans Hypothetical pr... 28 8.9
U58756-8|AAY44005.1| 183|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U10402-11|AAA19063.2| 434|Caenorhabditis elegans Gro-1 operon gene
protein 3 protein.
Length = 434
Score = 103 bits (246), Expect = 2e-22
Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 2/241 (0%)
Frame = -3
Query: 789 HNLQWEGLVRETAALSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSS 610
H ++ + R T ++ +F VRE +G +K L + V VD RD I S+G +F+
Sbjct: 202 HQVKLNAIWR-TLRATRDAAFSVREQAGHTLKFSLENAVAVDTRDRPILASRGILARFAQ 260
Query: 609 ELAGLGGGVAHLKTELQAQQNYELIEDIVLQLAGAAGVLHDMFGTEIP--DHFFLGGPTT 436
E AG+ G + +K L Q L +L + A L + E+ D +LGG
Sbjct: 261 EYAGVFGDASFVKNTLDLQAAAPLPLGFILAASFQAKHLKGLGDREVHILDRCYLGGQQD 320
Query: 435 LRGFQQRGVGPHSDGQATGGKVYWAAGAHVYAPLPFLRNKNGISSLFRSHFFVNAGCLAA 256
+RGF +G +D GG A H+Y PL ++ +H F+ +G +A+
Sbjct: 321 VRGFGLNTIGVKADNSCLGGGASLAGVVHLYRPLI-------PPNMLFAHAFLASGSVAS 373
Query: 255 PDNGLTNWEWANSARVSCGAGVALRLGSVARLELNYCAPLKARTNDCTAHGLQFGLGVHF 76
+ + ++ RVS G G+A S+ RLELNY PLK D G G GV+F
Sbjct: 374 VHSKNLVQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKYVLGDSLLGGFHIGAGVNF 433
Query: 75 L 73
L
Sbjct: 434 L 434
>AY052771-1|AAL14110.1| 434|Caenorhabditis elegans GOP-3 protein.
Length = 434
Score = 103 bits (246), Expect = 2e-22
Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 2/241 (0%)
Frame = -3
Query: 789 HNLQWEGLVRETAALSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSS 610
H ++ + R T ++ +F VRE +G +K L + V VD RD I S+G +F+
Sbjct: 202 HQVKLNAIWR-TLRATRDAAFSVREQAGHTLKFSLENAVAVDTRDRPILASRGILARFAQ 260
Query: 609 ELAGLGGGVAHLKTELQAQQNYELIEDIVLQLAGAAGVLHDMFGTEIP--DHFFLGGPTT 436
E AG+ G + +K L Q L +L + A L + E+ D +LGG
Sbjct: 261 EYAGVFGDASFVKNTLDLQAAAPLPLGFILAASFQAKHLKGLGDREVHILDRCYLGGQQD 320
Query: 435 LRGFQQRGVGPHSDGQATGGKVYWAAGAHVYAPLPFLRNKNGISSLFRSHFFVNAGCLAA 256
+RGF +G +D GG A H+Y PL ++ +H F+ +G +A+
Sbjct: 321 VRGFGLNTIGVKADNSCLGGGASLAGVVHLYRPLI-------PPNMLFAHAFLASGSVAS 373
Query: 255 PDNGLTNWEWANSARVSCGAGVALRLGSVARLELNYCAPLKARTNDCTAHGLQFGLGVHF 76
+ + ++ RVS G G+A S+ RLELNY PLK D G G GV+F
Sbjct: 374 VHSKNLVQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKYVLGDSLLGGFHIGAGVNF 433
Query: 75 L 73
L
Sbjct: 434 L 434
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.2
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Frame = +2
Query: 350 CAPAAQYTFPPVACP-SECGPTPRCWKPLSVVGPPRKK*SGISVPNMS-CRT--PAAPAS 517
CAP PP CP C P P C P PP +P+ S C++ PA +
Sbjct: 38 CAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAPVFN 97
Query: 518 CNTMSSINS*FCCAWSSVLRWATPPPNPASSLLNCTQEP*LGKIASSRWSTVTMCRNID 694
M N CC S R+ S L T++P +S+ M RN++
Sbjct: 98 QYAMQPAND-CCCRCGSPCRFMARHRTHGSKLFT-TEDPEEDPTCNSKKLRRVMERNMN 154
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 350 CAPAAQYTFPPVAC-PSECGPTPRCWKPLSVVGPPRKK*SGISVPNMSCRTPAAPASCN 523
C+P + V C + C P +C PL+ + P G + + C+ + CN
Sbjct: 146 CSPGKKCALHTVQCFTTPCDPVAKCETPLNFLSEPFNPGCGPNEHFVGCKNICSDTKCN 204
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 446 PPRKK*SGISVPNMSCRTPAAPASCNTMSSIN 541
PP +P M+C P+ PA CNT + N
Sbjct: 35 PPPSTCPTTCLPIMTCTPPSPPACCNTCGTCN 66
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 359 AAQYTFPPV---ACPSECGPTPRCWKPLSVVGPPRKK*SG 469
AAQ + PP A PSE PTPR P V PP K +G
Sbjct: 352 AAQSSVPPTPKSAVPSEAPPTPRSAAPSDV--PPTPKSNG 389
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 359 AAQYTFPPV---ACPSECGPTPRCWKPLSVVGPPRKK*SG 469
AAQ + PP A PSE PTPR P V PP K +G
Sbjct: 302 AAQSSVPPTPKSAVPSEAPPTPRSAAPSDV--PPTPKSNG 339
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 359 AAQYTFPPV---ACPSECGPTPRCWKPLSVVGPPRKK*SG 469
AAQ + PP A PSE PTPR P V PP K +G
Sbjct: 352 AAQSSVPPTPKSAVPSEAPPTPRSAAPSDV--PPTPKSNG 389
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 359 AAQYTFPPV---ACPSECGPTPRCWKPLSVVGPPRKK*SG 469
AAQ + PP A PSE PTPR P V PP K +G
Sbjct: 352 AAQSSVPPTPKSAVPSEAPPTPRSAAPSDV--PPTPKSNG 389
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 248 LSGAARQPAFTKKC--DRNRDEIPFLFRRKGSGAYTCAPAAQYTFPPVACPSECGPTPRC 421
+ G + A T KC D R+ IP++FR + ++ T P V + PR
Sbjct: 14397 IGGPRSESAATSKCIIDGLREGIPYVFRVAARNQHGTGEFSEPTIPVVVLADD---APRV 14453
Query: 422 WKPLSVVGPPRK 457
K + V P+K
Sbjct: 14454 LKAIKPVKIPKK 14465
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 248 LSGAARQPAFTKKC--DRNRDEIPFLFRRKGSGAYTCAPAAQYTFPPVACPSECGPTPRC 421
+ G + A T KC D R+ IP++FR + ++ T P V + PR
Sbjct: 14397 IGGPRSESAATSKCIIDGLREGIPYVFRVAARNQHGTGEFSEPTIPVVVLADD---APRV 14453
Query: 422 WKPLSVVGPPRK 457
K + V P+K
Sbjct: 14454 LKAIKPVKIPKK 14465
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 332 GSGAYTCAPAAQYTFPPVACPSEC----GPTPRCWKPLSVVGPP 451
G+ +C P Q PP AC + C GP P + P+ PP
Sbjct: 20 GATQNSCCPPPQCCGPPPACGNPCGGGFGPPPPPFGPVGYALPP 63
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 269 PAFTKKCDRNRDEIPFLFRRKGSGAYTCAPAAQYTFPPVACPSECGPT--PRC 421
PA + C R P + + S TC ++ YT P P +C P+ P C
Sbjct: 86 PACQQSCQRQCQSAPSVSNCQSSCQQTCQTSSCYT-PVAPAPVQCQPSCMPAC 137
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 269 PAFTKKCDRNRDEIPFLFRRKGSGAYTCAPAAQYTFPPVACPSECGPT--PRC 421
PA + C R P + + S TC ++ YT P P +C P+ P C
Sbjct: 86 PACQQSCQRQCQSAPSVSNCQSSCQQTCQTSSCYT-PVAPAPVQCQPSCMPAC 137
>U97013-1|AAB52340.2| 270|Caenorhabditis elegans Hypothetical
protein F28H1.4a protein.
Length = 270
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 88 EPELEAVRGAVVGPGLQRRAVVQLEPRHAAQ 180
EP +EA + P +Q+ A+V L+P H Q
Sbjct: 36 EPPIEAPSPPPLPPPIQKSAIVALDPTHILQ 66
>U58756-8|AAY44005.1| 183|Caenorhabditis elegans Hypothetical
protein F58F9.11 protein.
Length = 183
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 351 HVYAPLPFLRNKNGISSLFRSHFFVNAGCLAAPDNGLTNWEWANSARVSCGAGVALR 181
HV+ + FL GI RS +N C P GL + EWA++ V C A A R
Sbjct: 3 HVFILVAFLA---GICRADRSTCSINVTC---PTGGLWS-EWADAEGVECSASCAQR 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,451
Number of Sequences: 27780
Number of extensions: 365270
Number of successful extensions: 1245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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