Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l01
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S... 29 1.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 28 1.5
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 28 2.0
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 2.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 3.4
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 4.5
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 26 7.9
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 26 7.9
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 26 7.9
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 7.9
>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 200 VSIAKTLEELQLKKEW-QFSYDA-NVLKENPQSSAIIDNNPKDAEA 69
+ IAKT LQ W QF + N + EN + +IIDN PKD ++
Sbjct: 119 MDIAKTANSLQ--PGWNQFIFQTCNEIIENEKIHSIIDNIPKDIDS 162
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 820 EISSEEYKEPSAASVVMSGVIQIQPKVILILNRL 719
E +EE +E AA+ +GVIQ+Q V+ L RL
Sbjct: 425 EDENEEEEEAIAAAENNNGVIQVQGSVVSFLERL 458
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 800 QGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRV 651
+ A GFGG S D T++ Q GE+EE V S + ++
Sbjct: 815 KAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVETEAEAKSPLEKI 864
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -1
Query: 263 KSAIQRGRDVGFPLLRFDVNDVSIAKTLEELQLKKEWQFSYDANVLKENPQSSAIIDNNP 84
KS Q G F VN S A EE K+ QF++D N+++ + + ++ P
Sbjct: 174 KSESQLGESFSFNQDNTFVNYASPASITEEFVEPKDSQFNHDVNLMQGSAPGYSTVE--P 231
Query: 83 KDAEAS 66
+D AS
Sbjct: 232 EDNFAS 237
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 853 LPGFFQGHIRXEISSEEYKEPSAASVVMSGVIQIQPKVI 737
LPG +Q +R + + K PSA ++ S VI++ V+
Sbjct: 479 LPGSYQDLVRRCLMRDSRKRPSAIDLLSSHVIRLGTAVL 517
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -1
Query: 704 NEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCD 570
N P + + P D R + R R+ P + PPG+++ D
Sbjct: 216 NNIPPEINKVSPHDDLRPLSDSRRRARRPHPSDTIPPGASMARSD 260
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 323 VYLIVPKNSLKSADIVQVLAKSAIQRGR 240
V LI+P+ + + AD++ L +A+Q+GR
Sbjct: 539 VTLILPETANRDADLIDRLEIAAMQQGR 566
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 227 PLLRFDVNDVSIAKTLEELQLKKEWQFSYDANVLKENPQSSAIIDN 90
P F+V ++SI+ E Q + Q N KENPQ S + N
Sbjct: 162 PFYLFEVKNLSISFHFESPQQVEPCQ---PVNPFKENPQKSGFVVN 204
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 332 ILQVYLIVPKNSLKSADIVQVLAKSAIQRGRDVGFPLLRFDVNDVSIAKTLEELQLKK 159
ILQ L V N K AD+ +L + D P ++ V +V + K ++ K
Sbjct: 3 ILQSILFVTGNKHKLADVKNILGDRFEIKNHDYDLPEIQGSVKEVVLEKCKAAAEIVK 60
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -1
Query: 737 SNSKQVMVQGENEE---PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAP 597
+++++ G N + PV V RA + R+I + EH WP +P
Sbjct: 548 ASAEEAKESGNNNKYTRPVMVHRAILGSLERMIAILTEHYAGKWPFWMSP 597
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,011
Number of Sequences: 5004
Number of extensions: 65929
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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