Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10l01
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0337 - 22454281-22456399,22458520-22459388 30 2.7
07_03_0820 - 21749477-21749866,21751192-21751590 30 2.7
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 29 4.7
11_06_0347 + 22555087-22555943,22556638-22558783 29 4.7
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 29 4.7
11_03_0128 - 10437407-10438049,10438097-10438272 29 6.3
07_01_0089 - 687064-687543 28 8.3
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 28 8.3
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 8.3
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 364 GALKQCAVRYIILLDLVQLTQRAHFSSIVASHGQTDIPKARPR 492
G +K C + ++L +V + +F +++ SH QT P + R
Sbjct: 508 GKVKSCQIHDMVLEYIVSKSGEENFITVIGSHWQTPFPSYKVR 550
>07_03_0820 - 21749477-21749866,21751192-21751590
Length = 262
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +2
Query: 518 LAFRLTLNGLEPTP*PRNRTKPDLILEELIP 610
L FR+ L GL P P RNR K D EEL P
Sbjct: 219 LPFRVLLKGLLPHPLLRNRVKQD--FEELFP 247
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 330 ITGVSHRSQEQSEECRHCSSTGQERDTKRPRRRLSST 220
I G H S ++ EECR +S GQ + R+R S T
Sbjct: 486 IIGARHNSPQRKEECR-TNSPGQPKGHDEKRKRRSYT 521
>11_06_0347 + 22555087-22555943,22556638-22558783
Length = 1000
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 364 GALKQCAVRYIILLDLVQLTQRAHFSSIVASHGQTDIPKARPR 492
G +K C + ++L +V + +F +++ SH QT P + R
Sbjct: 504 GKVKSCQIHDMVLEYIVSKSGDENFITVIGSHWQTPFPSYKVR 546
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 577 KTRFDPGGADTSGQVCRTCSRTNRITR 657
K +D G DTSG VCR+ S N I +
Sbjct: 8 KKGWDSNGMDTSGSVCRSSSDINYINQ 34
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 520 CFSANIEWP*ANALAKKSHKTRFDPGGADTSGQVCRTCSR 639
C +A I P A++ H R A TS CRTC R
Sbjct: 109 CPAAGIHRPDDGHRARQRHLPRRSRSTASTSSTTCRTCCR 148
>07_01_0089 - 687064-687543
Length = 159
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/111 (22%), Positives = 39/111 (35%)
Frame = -1
Query: 695 PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCDFLARALAQGHSMLAEKQE 516
P +RR + RV+ FV VR ++ G + L G++ + E
Sbjct: 40 PAALRRFLADE--RVV-FVGYGVRSDCRKLEEQHGLEVARTVELRSLAGMGNTSMQRMAE 96
Query: 515 IRRGWSQIRGLALGISVCPWDATMLEKWARCVSCTKSRRMIYLTAHCLRAP 363
GW + + WDA L K +C + L H + AP
Sbjct: 97 EHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYACVDAYLSFRLAVHVVAAP 147
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = -1
Query: 857 VTARIFSRSYQXRNLVRRVQGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRR 678
VTAR+ S S +L V G +G GG RS+S SN + E +R
Sbjct: 285 VTARLTSTSSDSDSLPLLVDGVRNGIGGIARSFSGELGIFSNQTSELDSDLASEARSGQR 344
Query: 677 ARPSDVPRVIRFVREHVRQTWPEV 606
+R S R +++ +T+ ++
Sbjct: 345 SRGSHRGRHQSLTQKYSPKTFKDM 368
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -1
Query: 461 PWDATMLE----KWARCVSCTKSRRMIYLTAHCLRAPALYEKYKVQNILQVYLIVPKNSL 294
PW++T+ K + C K+ ++ PA+ EKY IL ++ N
Sbjct: 436 PWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKILHAADVIDLNMA 495
Query: 293 KSADIVQVLAKSAIQ 249
+ V++L + Q
Sbjct: 496 NAFKNVKILCQCPCQ 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,961,857
Number of Sequences: 37544
Number of extensions: 462513
Number of successful extensions: 1302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -