Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10l01
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 598 GADTSGQVCRTCSRTNRITRGTSDGRARRTLTGSSFSPCTIT 723
           GA  SG      S +N  T   S      T +  SF P T+T
Sbjct: 599 GASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLT 640


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 6   IHFFSGFC*SCINSHEIPFKA 68
           ++ +SGFC  CI   +I F A
Sbjct: 354 VNLWSGFCSQCIWQEKIVFAA 374


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 263 WPVLEQCLHSSDCS 304
           W  L QCL   DCS
Sbjct: 70  WRFLLQCLEDLDCS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,401
Number of Sequences: 438
Number of extensions: 4914
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)