Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k24
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   193   3e-50
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    31   0.13 
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    29   0.72 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    29   0.72 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   2.9  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    25   8.8  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  193 bits (470), Expect = 3e-50
 Identities = 111/187 (59%), Positives = 133/187 (71%), Gaps = 22/187 (11%)
 Frame = -2

Query: 611 LDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE-----GRGGR- 465
           L  +T+AE+FRD EGQD+LLFIDNIFRFTQAGSEV     R  S+  ++       G   
Sbjct: 280 LTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQ 339

Query: 464 ---FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLDS 294
               T K    ++++AVYVPADDLTDPAPATTFAHLDATTVLS +I+ELG+YPAVDPLDS
Sbjct: 340 ERITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDS 399

Query: 293 TSRVMDPNIIGAEHYGIARGVQ------KILQDI--ILGMEELSEDDQPEIARARKIQRF 138
            SR+MDP I+G EHY +A  VQ      K LQDI  ILGM+ELSE D+  + RARK+QRF
Sbjct: 400 KSRMMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRF 459

Query: 137 PSQPIQI 117
            SQP  +
Sbjct: 460 LSQPFAV 466



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = -3

Query: 682 ELETRASLVYGQKDEPHGARARVALTG 602
           E E++A+LV+GQ +EP GARARVALTG
Sbjct: 256 EGESKAALVFGQMNEPPGARARVALTG 282



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 15/29 (51%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
 Frame = -1

Query: 102 DHIPEAAFYMVGTIEDVI---AKLSQELS 25
           D +PE+AFYMVG+I+D +    K++QEL+
Sbjct: 496 DSLPESAFYMVGSIDDAVKKAEKIAQELA 524


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -2

Query: 476 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 297
           R GR   +    + +  + +P DD+T P P  T    +    +   +    +YP ++ L 
Sbjct: 315 RAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLP 374

Query: 296 STSRVM 279
           S SR+M
Sbjct: 375 SLSRLM 380


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -2

Query: 479 GRGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELG 324
           GRGG+F       S L  + V  D  T       FA  +   VL PA+   G
Sbjct: 405 GRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPG 456


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 389 PATTFAHLDATTVLSPAIAELGVYPA--VDPLDSTSRVMDPNIIGAEHY 249
           P  +  HLD   V  P    L V PA  +DPL+ T    D  IIG + Y
Sbjct: 279 PMDSIDHLD---VNDPTATGLPVLPASDIDPLNLTGNTQDSMIIGQQTY 324


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 302 LDSTSRVMDPNIIGAEHYGIARGVQKILQDIIL---GMEELSEDD-QPEIAR 159
           + S S  +DP IIG ++  +   +Q+I Q II       +L E+D Q E+ +
Sbjct: 11  ISSLSLSLDPEIIGGQNNFLENNLQQIFQKIIQERGPFRDLKEEDLQKELQK 62


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 27  RVPVTTWRSRPLWCPPCRRQLPECDPS 107
           +VP+   R  P++C  C   L E D S
Sbjct: 31  KVPMMRLRDNPMFCVSCINDLKESDAS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,150
Number of Sequences: 5004
Number of extensions: 51208
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)