Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k24
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 33 0.32
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 33 0.32
08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554... 31 0.99
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 30 1.7
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 30 2.3
10_02_0042 + 4493692-4494019,4494428-4494441 29 3.0
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 7.0
09_04_0142 + 15039745-15040538,15041094-15041218,15041842-150421... 28 7.0
08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819 28 7.0
06_03_0178 + 17594062-17595576 28 7.0
03_06_0688 - 35559239-35559433,35560455-35560792,35561357-355617... 28 7.0
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 28 9.2
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 28 9.2
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 28 9.2
01_06_1587 + 38468956-38469090,38470599-38470742,38470819-384708... 28 9.2
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412 28 9.2
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -2
Query: 476 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 297
R GR + + + + +P DD+T P P T + + + +YP ++ L
Sbjct: 354 RAGRIEGRSGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLP 413
Query: 296 STSRVM 279
S SR+M
Sbjct: 414 SLSRLM 419
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -2
Query: 476 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 297
R GR + + + + +P DD+T P P T + + + +YP ++ L
Sbjct: 324 RAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLP 383
Query: 296 STSRVM 279
S SR+M
Sbjct: 384 SLSRLM 389
>08_02_0056 +
11751585-11751672,11751741-11752060,11755363-11755483,
11755950-11756137,11756224-11756355,11756535-11756577,
11757298-11757395
Length = 329
Score = 31.1 bits (67), Expect = 0.99
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Frame = -2
Query: 308 DPLDSTSRVMDPNIIGAEHYG-----------IARGVQKILQDIILGMEELSEDDQPEIA 162
D DS + + DP++ GA++ G + R Q++ ++ G +E D + EI
Sbjct: 194 DQADSEANMYDPSLDGADNMGFGLPTESERSLMERVRQELKHELKQGYKEKLIDIREEIL 253
Query: 161 RARKIQRFPSQPIQILGARWITFRKLP 81
R R+ + P L A W + K P
Sbjct: 254 RKRRAGKLPGDTTSTLKAWWQSHAKWP 280
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -2
Query: 332 ELGVYPAVDPLDSTSRVMDPNIIGAEHYGIARGVQKILQDIILGMEELSEDDQPEIARAR 153
EL V P D L + + + + + GIA+GV+ +LQ + +E+ +D + EIAR R
Sbjct: 951 ELAVTP--DNLQQSETIAESDAVDPSILGIAKGVEMVLQR-LKRIEQGIQDLKEEIARLR 1007
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +1
Query: 607 SRPPGHAPRGAHPS----GRIPGTPGSPARTPA 693
S PP PR A PS G +PG P SP+ +PA
Sbjct: 14 SPPPRKRPRDASPSEEEEGGLPGGPPSPSPSPA 46
>10_02_0042 + 4493692-4494019,4494428-4494441
Length = 113
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 554 TVSPGPPRLGSAQPRSPGQGHPGTRP 631
T P PPR P SP +GHP P
Sbjct: 45 TAPPSPPRCRRRAPLSPPRGHPPLAP 70
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 613 PPGHAPRGAHPSGRIPGTPGSPARTP 690
PPGH P G G PG P P P
Sbjct: 280 PPGHPPDGMWHRGAAPGGPYRPLGPP 305
>09_04_0142 +
15039745-15040538,15041094-15041218,15041842-15042137,
15042267-15042554,15042834-15043193
Length = 620
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 46 GDHVLYGAHHVEGSFRNVIHL 108
G+HVL G HV G RN+I L
Sbjct: 524 GEHVLQGVRHVPGLKRNLISL 544
>08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819
Length = 334
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 619 GHAPRG--AHPSGRIPGTPGSPARTPAKITSR 708
G+ P+G A+ SGRIPG P S IT+R
Sbjct: 70 GYRPQGVPANESGRIPGQPDSSIENFKAITTR 101
>06_03_0178 + 17594062-17595576
Length = 504
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 610 RPPGHAPRGAHPSGRIPGTPGSPARTPAKITSRNS 714
R PGH+PR PS P TP + TP+ ++ S
Sbjct: 3 RSPGHSPRHLSPS-PAPSTPRPSSPTPSSASASAS 36
>03_06_0688 -
35559239-35559433,35560455-35560792,35561357-35561785,
35562014-35562110,35562314-35562438,35562758-35562908
Length = 444
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 168 DSQSQEDTEVPFAADPDFRREMDHIPEAAF 79
D QSQ+ T ADPD E+D+ AF
Sbjct: 202 DEQSQDSTSTDGCADPDETVELDYFDPYAF 231
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 296 STSRVMDPNIIGAEHYGIARGVQKILQDIILGMEELSEDDQ 174
S S + D N+ H+GI ++ +Q I++ EELS+ ++
Sbjct: 26 SVSELEDGNV--CSHHGIEEPNEESMQGIVMEQEELSDSEE 64
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 25 GEFL*QLGDHVLYGAHHVEGSFRNVIHLAPKIWIGCEGNLCI 150
G F+ + G+H+ G H G + N+ L K +G + NL +
Sbjct: 61 GSFVDRKGNHIEMGLHVFFGCYSNLFRLMKK--VGADNNLLV 100
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 296 STSRVMDPNIIGAEHYGIARGVQKILQDIILGMEELSEDDQ 174
S S + D N+ H+GI ++ +Q I++ EELS+ ++
Sbjct: 1040 SVSELEDGNV--CSHHGIEEPNEESMQGIVMEQEELSDSEE 1078
>01_06_1587 +
38468956-38469090,38470599-38470742,38470819-38470845,
38470970-38471060,38471224-38471267,38471352-38471450,
38472233-38472331,38472545-38472646,38472758-38472823,
38472960-38473084,38473175-38473346,38473588-38473674
Length = 396
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 39 TTWRSRPLWCPPCR 80
T +SRPL CPPCR
Sbjct: 56 TNIKSRPLLCPPCR 69
>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
Length = 255
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 46 GDHVLYGAHHVEGSFRNVIHL 108
G+H+L G HV G RN+I L
Sbjct: 159 GEHILQGVRHVAGLKRNLISL 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,362
Number of Sequences: 37544
Number of extensions: 420611
Number of successful extensions: 1804
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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