Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k24
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 211 3e-55
Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical pr... 33 0.17
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 31 0.67
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 30 2.0
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81103-3|CAB03209.1| 467|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 6.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 6.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 6.2
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 28 8.2
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 28 8.2
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 28 8.2
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 211 bits (516), Expect = 3e-55
Identities = 115/187 (61%), Positives = 138/187 (73%), Gaps = 22/187 (11%)
Frame = -2
Query: 611 LDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE-----GRGGR- 465
L +T+AE+FRD+EGQD+LLFIDNIFRFTQAGSEV R S+ ++ G
Sbjct: 293 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQ 352
Query: 464 ---FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLDS 294
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS IAEL +YPAVDPLDS
Sbjct: 353 ERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDS 412
Query: 293 TSRVMDPNIIGAEHYGIARGVQKILQD--------IILGMEELSEDDQPEIARARKIQRF 138
TSR+MDPN++G HY IARGVQKILQD ILGM+ELSE+D+ ++RARKIQRF
Sbjct: 413 TSRIMDPNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRF 472
Query: 137 PSQPIQI 117
SQP Q+
Sbjct: 473 LSQPFQV 479
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = -3
Query: 673 TRASLVYGQKDEPHGARARVALTG 602
++ SLVYGQ +EP GARARV LTG
Sbjct: 272 SKVSLVYGQMNEPPGARARVCLTG 295
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = -1
Query: 108 EMDHIPEAAFYMVGTIEDVIAKLSQELSK 22
E+DH+PE AFYM G I+DV K ++EL+K
Sbjct: 507 ELDHLPEVAFYMQGGIDDVFKK-AEELAK 534
>Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical
protein C54E10.4 protein.
Length = 345
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 666 ARVSSSYSGEDYFEELLIIAAHIYIF 743
A+++ YSG+ YFE+LL++ HI+ F
Sbjct: 121 AQINQDYSGKMYFEKLLLVLTHIFPF 146
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -2
Query: 476 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 297
R GR + + + + +P +D+T P P T + + + + +YP +D L
Sbjct: 329 RAGRVKGREGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLP 388
Query: 296 STSRVM 279
S SR+M
Sbjct: 389 SLSRLM 394
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -2
Query: 476 RGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDPLD 297
R GR + + + + +P DD+T P P T + + + +YP ++ L
Sbjct: 317 RAGRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLP 376
Query: 296 STSRVM 279
S SR+M
Sbjct: 377 SLSRLM 382
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 595 KVTRSRPPGHAPRGAHPSGRIPG--TPGSPARTPA 693
+ R P P GA+P G +PG TPG PA+ PA
Sbjct: 256 RAAAQRVPVPYPPGAYPPG-MPGPMTPGYPAQAPA 289
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 595 KVTRSRPPGHAPRGAHPSGRIPG--TPGSPARTPA 693
+ R P P GA+P G +PG TPG PA+ PA
Sbjct: 254 RAAAQRVPVPYPPGAYPPG-MPGPMTPGYPAQAPA 287
>Z81103-3|CAB03209.1| 467|Caenorhabditis elegans Hypothetical
protein M04G12.2 protein.
Length = 467
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 275 PNIIGAEHYGIARGVQKILQDIILGMEELSEDDQP 171
P +G E Y + V ++++++ ME+ SE+D P
Sbjct: 42 PEELGGEEYDMKIEVNNVVEEMVDDMEDSSEEDTP 76
>Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical
protein C09G1.4 protein.
Length = 546
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 551 TTVSPGPPRLGSAQPRSPGQGHPGTRPVGLILLAVYQ 661
TT P PP +G + P QG GT+ V L+A+ Q
Sbjct: 417 TTTGPPPPAMGLSVPVQYDQGEYGTQSVRAQLVALDQ 453
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 607 SRPPGHAPRGAHPSGRIPGTPGSPARTP 690
S PPG P+ R PG PG P R P
Sbjct: 241 SDPPGPPGPPGPPTRRPPGPPGPPTRRP 268
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 610 RPPGHAPRGAHPSGRIPGTPGSPARTP 690
RPPG P G P+ R PG PG P R P
Sbjct: 256 RPPG--PPGP-PTRRPPGPPGPPTRRP 279
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 560 SPGPPRLGSAQPRSPGQGHPGT 625
SP PPR GS P P +G P T
Sbjct: 288 SPPPPRAGSPPPPPPPRGSPPT 309
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 560 SPGPPRLGSAQPRSPGQGHPGT 625
SP PPR GS P P +G P T
Sbjct: 309 SPPPPRAGSPPPPPPPRGSPPT 330
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 560 SPGPPRLGSAQPRSPGQGHPGT 625
SP PPR GS P P +G P T
Sbjct: 294 SPPPPRAGSPPPPPPPRGSPPT 315
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 613 PPGHA-PRG-AHPSGRIPGTPGSPARTPA 693
PPG A P G A P G PG PG+P TP+
Sbjct: 170 PPGPAGPAGNAGPPGA-PGGPGAPGNTPS 197
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 683 RAGDPGVPGIRPEG*APRGACPGGL 609
+ G PG PG+ P G P G P G+
Sbjct: 572 QGGQPGHPGMMPPGMMPPGMMPPGM 596
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 613 PPGHAPRGAHPSGRIPGTPGSPARTP 690
PPG P G P G PG G P P
Sbjct: 588 PPGMMPPGMMPPGMHPGMAGMPPMHP 613
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 33 PVTTWRSRPLWCPPCRRQLPECDPSRA 113
P+T RS PL PP QLP+C S A
Sbjct: 892 PIT--RSHPLVAPPVSYQLPKCSNSLA 916
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 33 PVTTWRSRPLWCPPCRRQLPECDPSRA 113
P+T RS PL PP QLP+C S A
Sbjct: 426 PIT--RSHPLVAPPVSYQLPKCSNSLA 450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,750
Number of Sequences: 27780
Number of extensions: 318332
Number of successful extensions: 1407
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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