Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k24
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 551 TTVSPGPPRLGSAQPRSPGQGHP 619
           T +SP   +L S+QP  P Q +P
Sbjct: 805 TILSPVREKLSSSQPMQPPQQNP 827



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 41  NLAITSSMVPTM*KAASGM*SISRLKSGSAAKGTSVS 151
           N A+   M P     ASG  S   L SGS  + +S S
Sbjct: 585 NSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSAS 621


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 602 VTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEVRTRSSYQFEGR---GGRFTVKLSLRSNL 432
           V L  HFR  +   +  ++  +F        V  R  Y+FE      GR  ++ ++R   
Sbjct: 327 VVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRVLMR-TVRGKE 385

Query: 431 KAVYVP 414
           K  Y P
Sbjct: 386 KTCYYP 391


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -2

Query: 602 VTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEVRTRSSYQFEGR---GGRFTVKLSLRSNL 432
           V L  HFR  +   +  ++  +F        V  R  Y+FE      GR  ++ ++R   
Sbjct: 327 VVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYSSGRVLMR-TVRGKE 385

Query: 431 KAVYVP 414
           K  Y P
Sbjct: 386 KTCYYP 391


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 615 TRARAPWGSSFWPYTRDARVSSSYSG 692
           T  R PW S +W    D  +    +G
Sbjct: 274 TNRRNPWFSEYWEEVFDCLLKKERNG 299


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 615 TRARAPWGSSFWPYTRDARVSSSYSG 692
           T  R PW S +W    D  +    +G
Sbjct: 364 TNRRNPWFSEYWEEVFDCLLKKERNG 389


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 53  TSSMVPTM*KAASGM*SISRLKSGSAAKGTSVSSWLWLSLAGHLRTA 193
           TSSMVP     A+   +++   +  AA     S     SLAG++  A
Sbjct: 115 TSSMVPGFGSTAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPA 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,500
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)