Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k23
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 403 e-113
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 200 2e-52
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 199 5e-52
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 130 3e-31
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 30 0.51
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.2
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 2.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 4.7
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 6.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 6.3
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 8.3
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 26 8.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 26 8.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 8.3
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 403 bits (993), Expect = e-113
Identities = 182/239 (76%), Positives = 214/239 (89%)
Frame = -1
Query: 802 SVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLN 623
S+HQLVEN+DE++CIDNEAL I TLK+ +P+Y DLNHLVSA M+GVTT RFPG+LN
Sbjct: 188 SMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELN 247
Query: 622 ADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRH 443
+DLRKLAVNMVPFPRLHFF+ GFAPL + GS ++A++VPELTQQMFDA NMM A DPRH
Sbjct: 248 SDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRH 307
Query: 442 GRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATF 263
GRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKMSATF
Sbjct: 308 GRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATF 367
Query: 262 IGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 86
IGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 368 IGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Score = 39.9 bits (89), Expect = 5e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -3
Query: 866 FSVVPSPKVSDTVVEPYNAT 807
FSV P+PK SDTVVEPYNAT
Sbjct: 167 FSVAPAPKSSDTVVEPYNAT 186
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 200 bits (489), Expect = 2e-52
Identities = 87/245 (35%), Positives = 147/245 (60%), Gaps = 8/245 (3%)
Frame = -1
Query: 802 SVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLN 623
+ H ++N+D ++ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G LN
Sbjct: 194 TTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLN 253
Query: 622 ADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRH 443
DL + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M CDPR
Sbjct: 254 VDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRT 313
Query: 442 GRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPR-------- 287
GRY+ ++RG + ++V + +I+++ + FV+W P K +C PP+
Sbjct: 314 GRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIA 373
Query: 286 GLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 107
+ + + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 374 KVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 433
Query: 106 SEYQQ 92
+Y++
Sbjct: 434 RDYEE 438
Score = 32.7 bits (71), Expect = 0.072
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 866 FSVVPSPKVSDTVVEPYNA 810
FSV P+P+VS +VVEPYN+
Sbjct: 173 FSVYPAPQVSTSVVEPYNS 191
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 199 bits (485), Expect = 5e-52
Identities = 88/245 (35%), Positives = 145/245 (59%), Gaps = 8/245 (3%)
Frame = -1
Query: 802 SVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLN 623
+ H ++ D ++ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G LN
Sbjct: 190 TTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLN 249
Query: 622 ADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRH 443
DL + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M CDPR
Sbjct: 250 VDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRA 309
Query: 442 GRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMS--- 272
GRY+ ++RG + ++V + I+ K + FV+W P K +CD PP+ ++ S
Sbjct: 310 GRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIA 369
Query: 271 -----ATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 107
+ N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 370 KVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
Query: 106 SEYQQ 92
+Y++
Sbjct: 430 RDYEE 434
Score = 32.7 bits (71), Expect = 0.072
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3
Query: 866 FSVVPSPKVSDTVVEPYNA 810
FSV P+P+VS +VVEPYN+
Sbjct: 169 FSVYPAPQVSTSVVEPYNS 187
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 130 bits (313), Expect = 3e-31
Identities = 70/246 (28%), Positives = 131/246 (53%), Gaps = 10/246 (4%)
Frame = -1
Query: 802 SVHQLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLN 623
++ +L N D +DN AL I L PT+ N LVS MS TT LR+PG +N
Sbjct: 191 ALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMN 250
Query: 622 ADLRKLAVNMVPFPRLHFFIPGFAPLTSRGSQQYRAL---TVPELTQQMFDAKNMMAACD 452
DL + +++P PR HF + + P T++ ++ +A+ TV ++ +++ KN M + +
Sbjct: 251 NDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVN 310
Query: 451 P-RHGRYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPP---RG 284
P + ++++ + +G +V + ++ I+ + + F+ W P +++ A+ P
Sbjct: 311 PSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTN 370
Query: 283 LKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---D 113
++S + N T+I LFKR +Q+ + +R AFL Y E + E + E +S+ + D
Sbjct: 371 HRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVAD 430
Query: 112 LVSEYQ 95
L++EY+
Sbjct: 431 LINEYE 436
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = -3
Query: 866 FSVVP-SPKVSDTVVEPYNA 810
+SV P S VSD VV+PYN+
Sbjct: 169 YSVFPNSQSVSDVVVQPYNS 188
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 418 VFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIG--NSTA 245
V+ + ++ + + +MNI+ N S W+PN + +P G K+S I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 244 IQELFK 227
+EL++
Sbjct: 403 KEELYE 408
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +1
Query: 472 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 651
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 380 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 435
Query: 652 SSRLTLSPKQDGSSRHKSGLLASACGS 732
+S LS ++ S S+ S
Sbjct: 436 ASSTPLSSVNSTTATSASSTPLSSVNS 462
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +1
Query: 472 SSRQTSAASTPAPLAHGTADSRVTSEARNPV*KSATVGTAPCSLLACADLHSTDQGTVDK 651
S+ TSA+STP A+ T + V+S A P +++V P S ++ L S + T
Sbjct: 494 STSATSASSTPLTSANSTTSTSVSSTA--PSYNTSSV--LPTSSVSSTPLSSANSTTATS 549
Query: 652 SSRLTLS 672
+S L+
Sbjct: 550 ASSTPLT 556
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 256 NSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDE 149
NS+ IQ L K ++ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 691 LNHLVSATMSGVTTCLRFPGQLN 623
L HLV A + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 628 TDQGTVDKSSRLTLSPKQDGSSRHKSGLLASA 723
+ Q DKSS L ++ KQ S HK L A
Sbjct: 347 SQQPVADKSSNLFVTSKQSSVSGHKDNLTEEA 378
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 692 LEPSCFGDNVRRDDLSTVPWSVECRSAQASSEHGAVPTVALFH 564
LE F DN + +++S C + A+S H A AL H
Sbjct: 523 LETKKFSDNSQGEEISDNLHGESCNNPNANSVHSAQLLQALLH 565
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 262 IGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 86
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 439 RYLTVAAVFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 323
+Y+ +VF G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 8.3
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -1
Query: 793 QLVENTDESYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL 614
Q+ NTD S N LY RT+ DLN S + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 613 RKLAVNMV 590
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 776 CIFYQLMY*XGWHCTVRPQYLI 841
CI + +Y WHC+++ YL+
Sbjct: 109 CINFFDIYQTNWHCSIQVSYLV 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,920
Number of Sequences: 5004
Number of extensions: 64851
Number of successful extensions: 229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -