Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k21
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.3
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 28 1.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.3
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 26 5.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 7.1
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 9.4
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 9.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 9.4
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 263 STVRNTTIAPTTIGALLSISSTTAAXXXXXXXXXXXXIEKYSRIPSVDNCLSPVIVSSTV 442
ST T+ PT+ S+SST A+ + + + + LS S++
Sbjct: 163 STNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSA 222
Query: 443 FQSSLAPSAM 472
SSLA S++
Sbjct: 223 TSSSLASSSL 232
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 531 PLHECSLYGHKEV-GKLLSNG 472
PLH SLY HK++ LLSNG
Sbjct: 898 PLHYASLYDHKDICVNLLSNG 918
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 697 KRDRRVTSGVEERKRFGPCRQISRCVTCSIHHVPNISRSGI 575
KR R++TS E + C ++ C C +PN+ +GI
Sbjct: 14 KRHRKITSCRECHRLKLKCDRVWPCENCKKRGIPNLCPNGI 54
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 609 IEHVTQRDIWRQGPNRFRSS-TPEVTRLSLLSVDPTSVHSSFPNYYSRIYPI--SMYPKR 779
+EH+ Q I G N S +PE L++ P+S+ S P Y P+ YP
Sbjct: 389 LEHMRQSCISPSGTNFSPSCYSPESLMQQPLTLSPSSIPSGLPTYAHVNSPLGTEQYPSE 448
Query: 780 TRTP 791
P
Sbjct: 449 AYPP 452
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 718 TLVGSTDKRDRRVTSGVEERKRFGPCRQISRCVTC 614
T + STD + + +G +E + G +SR TC
Sbjct: 329 TALDSTDSEEIDIMNGFDEERDSGGTNMVSRSETC 363
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 425 IVSSTVFQSSLAPSAMPLLNNFPTSLCPYKEHSWSGPVWLTFLQRENK 568
++ S V +S PSAMP+ +PT PY + P + +++ ++
Sbjct: 572 MIPSIVLPNSAMPSAMPM---YPTPTMPYIPVGYPVPGYTPYMRNPSQ 616
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 765 WRWDIFGNSSLENWNAHWWDLRTKETGVSPPVLRNE 658
W+W+ + L +N W L KET PPVL +
Sbjct: 197 WQWEFWILLILSGFNLFWAFLLLKET--YPPVLNRK 230
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 398 SVDNCLSPVIVSSTVFQSSL 457
S++NC+ P ++ VF SSL
Sbjct: 271 SIENCIPPDLIIDKVFSSSL 290
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 639 RQGPNRFRSSTPEVTRLSLLSVDPTSVHS 725
R+G F ST EVTR SL S TS S
Sbjct: 74 RRGKEDFSISTAEVTRSSLSSSRSTSSRS 102
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 200 PQNERIFLPRSCFLAQYNTIISTVRNTTIAP---TTIGALLSISSTTAA 337
P N + SC L+ N+ ST N +AP T + +ISS++++
Sbjct: 127 PNNSIPLMANSCLLSADNSSSSTTSNPNVAPPISTLPDPVATISSSSSS 175
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 765 WRWDIFGNSSLENWNAHWWDLRTKETGVSPPVLRNE 658
W+W+ + L +N W L KET PPVL +
Sbjct: 197 WQWEFWILLILSGFNLFWAFLLLKET--YPPVLNRK 230
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 765 WRWDIFGNSSLENWNAHWWDLRTKETGVSPPVLRNE 658
W+W+ + L +N W L KET PPVL +
Sbjct: 197 WQWEFWILLILSGFNLFWAFLLLKET--YPPVLNRK 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,510
Number of Sequences: 5004
Number of extensions: 68693
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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