Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k21
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1332 - 29403320-29407804 31 1.4
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 30 2.4
12_02_0332 + 17653413-17653581,17654045-17654139,17654292-176544... 29 4.3
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413 29 5.6
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 28 7.4
09_04_0261 + 16207565-16207825,16207935-16208087,16208191-162083... 28 9.8
05_04_0304 - 20048518-20049003,20049074-20049412 28 9.8
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 28 9.8
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 501 KEVGKLLSNGMALGASEDWNTVLETMTGERQLSTEGILEYFSILEDFL 358
K VG+LL N + L +DW VLE+ E Q S I+ + D+L
Sbjct: 484 KTVGRLLRNHLDL---DDWMRVLESKEWESQTSENDIMPALKLSYDYL 528
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 777 VLDTWRWDIFGNSSLENWNAHWWDLRTKETGVSPPVLRNESD 652
+LDTWR + N+ + W WW +G S E D
Sbjct: 717 MLDTWR-QVTKNTMFDEWLNEWWKRSPTSSGPSSDASHPEED 757
>12_02_0332 +
17653413-17653581,17654045-17654139,17654292-17654444,
17655013-17655117,17655197-17655268,17655514-17655626,
17655727-17655861,17655970-17656038,17656154-17656241,
17656348-17656419,17656505-17656605,17656724-17656841,
17656933-17656992,17657593-17657703,17659044-17659154
Length = 523
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = -3
Query: 696 KETGVSPPVLRNESD-LDPAAKYHVVSHVQYITYLISHVLEFQILFSLCKKVNHTGPLHE 520
++ GV V+R E + + P K +V + YLI H L+ LCKK+ +T +
Sbjct: 24 RKDGVVREVIRMEREAVIPVLKPKLVMK---LAYLIEHDLDRSEFLKLCKKIEYT--IRA 78
Query: 519 CSLYGHKEVGKLLSNGMALGASEDWNTVLETMTGERQLSTEGI 391
L +++ +L + + + ++ + ++GE++L + +
Sbjct: 79 WYLLQFEDLMQLYAMFDPVSFMQQLYSLFDPVSGEKRLEQQNL 121
>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
Length = 677
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 501 KEVGKLLSNGMALGASEDWNTVLETMTGERQLSTEGILEYFSILEDFL 358
K VG+LL N + L E W +VLE+ E Q I+ + D+L
Sbjct: 431 KTVGRLLRNHLDL---EHWTSVLESREWELQTGENDIMPALKLSYDYL 475
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 531 PLHECSLYGHKEVGK-LLSNGMALGASEDWNTVLETMTGERQLSTEGIL 388
PLHE + GH + + LLS G ++ S T L + ST IL
Sbjct: 193 PLHEAAKKGHVGIARLLLSKGASVDVSSSEGTPLHVAASNGKSSTVQIL 241
>09_04_0261 +
16207565-16207825,16207935-16208087,16208191-16208316,
16208595-16208847,16209303-16209485,16209486-16209582,
16209706-16209769,16209904-16210053,16210215-16210387,
16210497-16210536,16211170-16211223
Length = 517
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 496 SRKIVKQWHGTGCK*RLEHCARNNDRGKTIIDRRNPRILF 377
+R++ K+++GT K RL N ++D N +ILF
Sbjct: 81 NRRLQKKFNGTATKPRLSVFCSNRQLYAMLVDDHNKKILF 120
>05_04_0304 - 20048518-20049003,20049074-20049412
Length = 274
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 510 YGHKEVGKLLSNGMALGASEDWNTVLETMTGERQLSTEGILEYFSILEDFLRKENLR 340
+G +VG L + LG W V E +TG R + + + + L DF +E ++
Sbjct: 158 FGGDQVGLL---DVVLGCGSYWLAVFEEVTGVRLVDADAFPLFHAWLRDFEAQEEVK 211
>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 27.9 bits (59), Expect = 9.8
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Frame = -3
Query: 651 LDPAAKYHVVSHVQYITYLISHVLEFQILFSLCKKVNHTGPLHECSLYGHKEVGKLLSNG 472
L+ H VSH +Y + H E Q+ + + LHE + H EV + N
Sbjct: 708 LESRETLHNVSH----SYTLDHKQEEQLFGDISDALAELSQLHERLTHPHIEVSEAEKND 763
Query: 471 MALGASEDWNTVLETMTGERQLSTEGILEYFSILEDFLRKENLRLAAV------VEDMDK 310
DW + + Q + I + L + + +E L L + VE+ DK
Sbjct: 764 FNSSDEIDWTRKYNELATKLQGMCKSIR---AALTNHVHREELELWPLFDEHFSVEEQDK 820
Query: 309 SAPIVVGA 286
++G+
Sbjct: 821 LVGRIIGS 828
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,297
Number of Sequences: 37544
Number of extensions: 410734
Number of successful extensions: 1113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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