Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k21
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 77 1e-14
Z30973-3|CAA83222.1| 420|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 3.8
U64598-14|AAL65780.1| 190|Caenorhabditis elegans Paf-acetylhydr... 28 8.9
U64598-13|AAL65779.1| 388|Caenorhabditis elegans Paf-acetylhydr... 28 8.9
U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,... 28 8.9
AF386745-1|AAL57290.1| 388|Caenorhabditis elegans PAF-2 protein. 28 8.9
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 77.4 bits (182), Expect = 1e-14
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Frame = -3
Query: 792 MAYAYVLDTWRWDIFGNSSLEN-WNAHWWDLRTKETGVSPPVLRNESDLDPAAKYHVVS- 619
+ + D WR+++F + +N N WW++R K GV P N S+LD A ++ VS
Sbjct: 609 LPFTIAADNWRYELFDGTVPKNKLNDRWWEIRNKYEGVRSPQPYNTSNLD-ALIHNSVSQ 667
Query: 618 -HVQYITYLISHVLEFQILFSLCKKVNHTGPLHECSLYGHKEVGKLLSNGMALGASEDWN 442
H LIS+VL+FQIL +LC + G + ++ + L M LG+S W
Sbjct: 668 VHSPATRTLISYVLKFQILKALCPE----GTILSEGCILSEDTTEKLRETMKLGSSITWL 723
Query: 441 TVLETMTGERQLSTEGILEYFSILEDFLRKEN 346
LE ++G+ +L + +LEY+ L ++LR N
Sbjct: 724 KALEMISGKGELDAQPLLEYYEPLINWLRNTN 755
>Z30973-3|CAA83222.1| 420|Caenorhabditis elegans Hypothetical
protein B0284.4 protein.
Length = 420
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 80 HYSWLIDRRQTLSSTIPSISFVLL*G--TSLVTISREPFLVRPQNERIFLPRSCFLAQYN 253
+Y+ L+++ +TL+ I + V TS + S + F + QN+R+ L + LA N
Sbjct: 351 YYTDLLEKNKTLTDVIVQLPAVSRSNHTTSAIMYSSQRFAIDVQNDRLALEQKGQLALQN 410
Query: 254 TIISTVRNTT 283
I NTT
Sbjct: 411 MINGNGGNTT 420
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = +2
Query: 254 TIISTVRNTTIAPTTIGALLSISSTTAAXXXXXXXXXXXXIEKYSRIPSVDNCLSPVIVS 433
T+ STV +TT PT+ + + ST+ + S + + S S
Sbjct: 285 TVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQS 344
Query: 434 STVFQSSLAPSAMPLLNNFPTSLCP 508
S+ SS PS+ L + PT+ P
Sbjct: 345 SSTITSS--PSSTTLSTSIPTTTTP 367
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = +2
Query: 254 TIISTVRNTTIAPTTIGALLSISSTTAAXXXXXXXXXXXXIEKYSRIPSVDNCLSPVIVS 433
T+ STV +TT PT+ + + ST+ + S + + S S
Sbjct: 285 TVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQS 344
Query: 434 STVFQSSLAPSAMPLLNNFPTSLCP 508
S+ SS PS+ L + PT+ P
Sbjct: 345 SSTITSS--PSSTTLSTSIPTTTTP 367
>U64598-14|AAL65780.1| 190|Caenorhabditis elegans
Paf-acetylhydrolase protein 2,isoform b protein.
Length = 190
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 791 WRTRTFWIHGDGIYSGIVVWKTGMHTGGIYGQKRQACHLRC-*GTKA-IWTLPPNITLCH 618
W + + HG G Y G K + T + G+KR+ C TK W P + H
Sbjct: 59 WLPKPQYAHGLGEYLGQSSQKMNVITSTVVGEKREDCIENAQMSTKCDKW---PIVVFSH 115
Query: 617 MFNTSRT*YLTF 582
SRT Y T+
Sbjct: 116 GLGGSRTFYSTY 127
>U64598-13|AAL65779.1| 388|Caenorhabditis elegans
Paf-acetylhydrolase protein 2,isoform a protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 791 WRTRTFWIHGDGIYSGIVVWKTGMHTGGIYGQKRQACHLRC-*GTKA-IWTLPPNITLCH 618
W + + HG G Y G K + T + G+KR+ C TK W P + H
Sbjct: 59 WLPKPQYAHGLGEYLGQSSQKMNVITSTVVGEKREDCIENAQMSTKCDKW---PIVVFSH 115
Query: 617 MFNTSRT*YLTF 582
SRT Y T+
Sbjct: 116 GLGGSRTFYSTY 127
>U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,
short chain protein28 protein.
Length = 436
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = -3
Query: 609 YITYLISHVLEFQILFSLCKKVNHTGPLHECSLYGHKEVGKLLSNGMALGASEDWNTVLE 430
Y+T L+++++ F KV G ++ +K GK++S+ A +++W+T+
Sbjct: 215 YVTPLVTYMVHDS--FEESGKVFEAGAGWYGTIQYYKSKGKVISHASADDIAKNWSTI-T 271
Query: 429 TMTGERQLS--TEGILEYFSILED 364
M G + TE SILE+
Sbjct: 272 NMNGAEYIGTITEQSARLVSILEE 295
>AF386745-1|AAL57290.1| 388|Caenorhabditis elegans PAF-2 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 791 WRTRTFWIHGDGIYSGIVVWKTGMHTGGIYGQKRQACHLRC-*GTKA-IWTLPPNITLCH 618
W + + HG G Y G K + T + G+KR+ C TK W P + H
Sbjct: 59 WLPKPQYAHGLGEYLGQSSQKMNVITSTVVGEKREDCIENAQMSTKCDKW---PIVVFSH 115
Query: 617 MFNTSRT*YLTF 582
SRT Y T+
Sbjct: 116 GLGGSRTFYSTY 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,967,443
Number of Sequences: 27780
Number of extensions: 379782
Number of successful extensions: 1186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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