Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k20
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 53 6e-08
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 34 0.021
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.037
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 29 0.79
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.4
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 28 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 28 1.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.8
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.4
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 27 3.2
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 4.2
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 5.6
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 7.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.7
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.7
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.7
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 9.7
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 52.8 bits (121), Expect = 6e-08
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 532 VCRICMTRGR--ERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
+CR+C G L PC C GS+ VH CL WL + HCELC
Sbjct: 7 ICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELC 54
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 34.3 bits (75), Expect = 0.021
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 802 KGISENVVVADIPN-VHAVTRIQNDTQVLAPLNNNDARTNEIIPNE 668
KGI NVV+ DI N H + ++N + ++NN TN IPN+
Sbjct: 852 KGIESNVVIKDISNQTHEINSVENKAET---VSNNSKITNFDIPND 894
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 33.5 bits (73), Expect = 0.037
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -2
Query: 577 LVLAQRDSISSIGSNVCRICMT-RGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCE 401
LVL + S+ G C IC + ER + C H +CL +W + C
Sbjct: 1542 LVLKKNISMHFEGVEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCP 1601
Query: 400 LCGFSY 383
LC S+
Sbjct: 1602 LCRSSF 1607
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 343 LRLWFGNPRNRSHLQSDCLIFWLLSTVTAGLLAVCIV 233
L WF +P + SHL + ++LL L VC++
Sbjct: 275 LGTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI 311
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 652 KTENKLSKLGTDKKKTSGGLSERSDLVLAQRDSISSIGS 536
K++ L L KKK + RS+L + DS+ SIG+
Sbjct: 113 KSQLGLDVLAVQKKKEKSQVEGRSELSQVENDSLESIGN 151
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 456 TFARDPLQLQGEISLSRPRVIQILQTFEPILE---MESLCAKTKSDLSDRP 599
TF DP+Q GE + + +++ + FEP+L+ +E+ S + D P
Sbjct: 294 TFPADPIQEFGEKAYNERELMEEISNFEPLLDDNLLENANEAVNSPVVDAP 344
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 227 SSHDAHGQQTGRNSRQEPKDEA 292
SSH GQQ R+ RQ P EA
Sbjct: 64 SSHSTLGQQQARDGRQSPSKEA 85
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 796 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 677
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = +3
Query: 519 QILQTFEPILEMESLCAKTKSDLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRA 698
Q+L T PI+E ++D S R + ++++ SFD + + ++ ++ R
Sbjct: 195 QVLAT-NPIMEAFGNAKTIRNDNSSRFGK--YVTI-SFDENLLITGANVNTY-LLERSRV 249
Query: 699 SLLFKGAKTWVSFWILVTACT 761
L KG + + F+ L+T CT
Sbjct: 250 VSLLKGERNYHIFYQLITGCT 270
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 173 LPTSVELTKFVTLDNKILSSHDAHGQQTGRNSRQEPKDEAVRLQMASIARIAEPQPERL 349
LP S+ T+ T D+ S + ++ + +P + AS+A++++P PERL
Sbjct: 365 LPQSIPATESETSDDSSFSYKRSPCKRKLVEATAQPAISTSVAEGASLAQVSKPLPERL 423
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 474 LQLQGEISLSRPRVIQILQTFEPILEMESLCAKTKSDL 587
L +QG LS ++ ILQTF P+L M+ L ++ S +
Sbjct: 295 LNMQGGSVLSILQLQSILQTFGPLLIMKPLRSQNVSQI 332
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 411 FLPTWFSHLSRQVKCTFAR 467
FLPTW H+SR V F++
Sbjct: 415 FLPTWLRHVSRIVYYMFSK 433
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = +2
Query: 62 DVMIFPQKINGHRVSTQHNCHKKVHCGLCDAM*NTFLLPTSVELTK-FVTLDNKILSSHD 238
D FP ++ H S HN +++ + N +L L + V L+ + +
Sbjct: 434 DTTQFPSYLSYHETSVSHNTYRQNNLEELKNQ-NDYLTSQITNLEEGMVMLNKENTKLSE 492
Query: 239 AHGQQTGRNSRQEPKDEAVRLQMASIARIAEPQPERL*HRV 361
A S E E ++ A + E QP+ L +R+
Sbjct: 493 ALSNHRVTRSEMEEATEILKNNSADLKAQLEKQPQELENRL 533
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 110 QHNCHKKVHCGLCDA 154
+H C K+ H GLC A
Sbjct: 350 EHTCKKRCHSGLCGA 364
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 80 QKINGHRVSTQHNCHKKVHCGLCDAM*NTFLLP 178
+ I G +S H C K H G C T +P
Sbjct: 476 ENICGKLLSCGHRCKYKCHLGSCGTCSETLTIP 508
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Frame = +1
Query: 562 FVPKPNQIFPIGHQK-----FSSYRYQVSTAYFRF 651
F P+PN IGH K F RY Y RF
Sbjct: 267 FPPEPNGYLHIGHSKAIAVNFGFARYHNGVCYLRF 301
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 14 SSNLDIDIGSPPSVPHDVMIFPQ 82
SSNL I+I PPS + +I PQ
Sbjct: 517 SSNLSINIDIPPSPLQNTVISPQ 539
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 636 SLFSVFAVTMTSFGMISLVRASLLF 710
SLF +F+++ + GM+ V ++L+F
Sbjct: 66 SLFGIFSISFSVLGMLPSVASTLVF 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,721,050
Number of Sequences: 5004
Number of extensions: 82209
Number of successful extensions: 255
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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