Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k20
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 55 6e-08
05_07_0040 + 27243195-27243428,27243665-27243736,27243837-272439... 52 4e-07
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888... 51 1e-06
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858... 50 2e-06
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916... 49 5e-06
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 48 9e-06
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245... 47 2e-05
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 46 3e-05
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 46 4e-05
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 46 5e-05
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 46 5e-05
01_05_0670 - 24159922-24160014,24160127-24160410,24160856-241609... 44 1e-04
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380... 44 1e-04
05_03_0659 - 16715437-16715520,16715607-16715714,16715788-167158... 44 1e-04
01_02_0112 - 11230202-11230282,11230362-11230469,11230588-112306... 44 1e-04
05_02_0096 - 6568030-6568252,6570998-6571281 42 6e-04
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 38 0.013
06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750 37 0.017
05_05_0064 + 22063951-22064462,22066344-22066566 37 0.022
04_04_1700 - 35465563-35465625,35465748-35465875,35466018-354660... 37 0.022
01_06_0302 - 28318910-28318999,28319118-28319210,28319303-283193... 33 0.21
11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135... 33 0.36
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 31 0.83
01_01_0131 - 1186129-1186242,1186640-1186720,1186843-1186993,118... 31 0.83
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 31 1.1
10_08_0970 + 21944930-21945061,21945532-21945650,21945758-219458... 30 2.5
08_02_1103 - 24329120-24329623 30 2.5
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 30 2.5
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 30 2.5
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 29 5.8
04_04_0897 - 29186821-29187459 29 5.8
04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174 29 5.8
12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919 28 7.7
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 7.7
08_02_1070 - 24106152-24106967 28 7.7
04_04_0135 + 23020314-23020389,23021418-23021479,23021935-230220... 28 7.7
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 544 IGSNVCRICMTRG-RERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSY-PAIR 371
IG CRIC + L SPC C GSL H C++RW N+ G CE+C SY P
Sbjct: 27 IGMVECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYT 86
Query: 370 TP 365
P
Sbjct: 87 AP 88
>05_07_0040 +
27243195-27243428,27243665-27243736,27243837-27243904,
27243987-27244113,27244514-27244669
Length = 218
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -2
Query: 529 CRICMTRGRERLI-SPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSYPAIRTPRYT 356
CRIC + + +PC+C+GSL H C++RW ++ G CE+C Y TP YT
Sbjct: 55 CRICQEEDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQY----TPNYT 109
>01_06_1646 -
38887178-38887271,38888230-38888270,38888744-38888827,
38888933-38889080,38889232-38889299,38889563-38889634,
38890479-38890673
Length = 233
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 529 CRICMTRGRERLI-SPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSY 383
CRIC G E + SPC C G+L H C++RW ++ G CE+C Y
Sbjct: 42 CRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVY 91
>06_03_0875 -
25584789-25585307,25585424-25585570,25585734-25585897,
25586015-25586172,25586536-25586904,25586998-25587209,
25587439-25588059,25588561-25588699,25588968-25589044,
25589120-25589800,25590641-25590889
Length = 1111
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -2
Query: 583 SDLVLAQRDSISSIGSNVCRICMTRGRER--LISPCNCKGSLANVHLTCLERWLNQVGRN 410
S +A+ D G +VCRIC G + L PC C GS+ VH CL +WL+
Sbjct: 22 STAAVAEEDEEEEEG-DVCRICRNPGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSR 80
Query: 409 HCELCGFSY 383
CE+C ++
Sbjct: 81 QCEVCKHAF 89
>08_02_0785 +
21190002-21190253,21190452-21190523,21191498-21191631,
21191700-21191850,21191938-21192087
Length = 252
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 529 CRICMTRGR-ERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSY 383
CRIC L SPC C GSL H C++RW ++ G CE+C Y
Sbjct: 61 CRICQEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPY 110
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 532 VCRICM---TRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
VCRICM + G + L C+CKG LA H C +W G CE+C
Sbjct: 214 VCRICMVELSEGSDTLKLECSCKGELALAHKHCAMKWFTMKGTRTCEVC 262
>08_01_0002 -
20208-20594,21525-21671,21754-21917,22005-22162,
24533-24826,24916-25121,25216-25812,26366-27097
Length = 894
Score = 47.2 bits (107), Expect = 2e-05
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = -2
Query: 532 VCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
+CR+ GR L PC C+GS+ VH CL RWL +HCE+C
Sbjct: 32 ICRVPAEAGRP-LRHPCACRGSIRFVHDDCLLRWLATRRTSHCEVC 76
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 46.4 bits (105), Expect = 3e-05
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 526 RICMTRGRERLIS-PCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
R+C + E L+ C C+G L+ H TC+ W G N CE+C
Sbjct: 25 RVCQQKTEEPLVDLGCRCRGDLSKAHRTCISVWFRTRGSNKCEIC 69
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 46.0 bits (104), Expect = 4e-05
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 532 VCRICMTR---GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
VCRIC+ G E L C+CKG LA H C +W + G C++C
Sbjct: 250 VCRICLVELNEGGETLKMECSCKGELALAHQDCAVKWFSIKGNKICDVC 298
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 532 VCRICMTR---GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
VCRIC+ G E L C+CKG LA H C +W + G C++C
Sbjct: 242 VCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGNKTCDVC 290
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 45.6 bits (103), Expect = 5e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -2
Query: 529 CRICMTRGRERLISPCNCKGSLANVHLTCLERW 431
CRIC+ + LI+PC+CKG+ VH +CL+ W
Sbjct: 183 CRICLDNEGDDLIAPCHCKGTQKYVHRSCLDNW 215
>01_05_0670 -
24159922-24160014,24160127-24160410,24160856-24160979,
24161174-24161320,24161752-24161837,24162039-24162234
Length = 309
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -2
Query: 559 DSISSIGSNVCRICM---TRGRERLISPCNCKGSLANVHLTCLERWLN---QVGRNHCEL 398
+ I + + CRIC+ T + LISPC CKG+ VH CL+ W + +HC
Sbjct: 45 EEIEAASAACCRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTT 104
Query: 397 C 395
C
Sbjct: 105 C 105
>11_06_0334 +
22437187-22437322,22437430-22437515,22437927-22438073,
22438166-22438274,22439510-22439633,22439727-22439752,
22439774-22440000,22440084-22440185
Length = 318
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 529 CRICM-TRGRERLISPCNCKGSLANVHLTCLERW---LNQVGRNHCELCGFSY 383
CRIC+ T GR+ I+PC CKG+ VH CL+ W +HC C Y
Sbjct: 38 CRICLETDGRD-FIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPY 89
>05_03_0659 -
16715437-16715520,16715607-16715714,16715788-16715871,
16715963-16716095,16717051-16717118,16717528-16717599,
16717771-16717843,16718038-16718057
Length = 213
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 490 SPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
SPC C GSL H C++RW ++ G CE+C
Sbjct: 22 SPCGCSGSLKYAHRGCVQRWCDEKGSTLCEIC 53
>01_02_0112 -
11230202-11230282,11230362-11230469,11230588-11230671,
11230791-11230920,11231864-11231931,11232412-11232483,
11232670-11232705
Length = 192
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 490 SPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
SPC C GSL H C++RW ++ G CE+C
Sbjct: 3 SPCGCSGSLKYAHRGCVQRWCDEKGSTLCEIC 34
>05_02_0096 - 6568030-6568252,6570998-6571281
Length = 168
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 508 GRERLIS-PCNCKGSLANVHLTCLERWLNQVGRNHCELCG 392
G RL+ C C+G LA H C E W + G CE+CG
Sbjct: 62 GSGRLVRLGCGCRGELAAAHRRCAEAWFSVRGNRRCEICG 101
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 502 ERLISPCNCKGSLANVHLTCLERWLN---QVGRNHCELC 395
+ LISPC CKG+ VH +CL+ W + +HC C
Sbjct: 90 DELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTC 128
>06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750
Length = 433
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Frame = -2
Query: 532 VCRICMTR---------GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
VCRICM G L C CKG LA H C +W + G C++C
Sbjct: 260 VCRICMVALSEDGASGGGGGTLKLECRCKGELALAHGDCAVKWFSIKGNATCDVC 314
>05_05_0064 + 22063951-22064462,22066344-22066566
Length = 244
Score = 36.7 bits (81), Expect = 0.022
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 484 CNCKGSLANVHLTCLERWLNQVGRNHCELC 395
C+CKG L+ H C E W G CE+C
Sbjct: 147 CSCKGDLSYSHKQCAETWFKIRGNKICEIC 176
>04_04_1700 -
35465563-35465625,35465748-35465875,35466018-35466096,
35466818-35467624
Length = 358
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 484 CNCKGSLANVHLTCLERWLNQVGRNHCELCGFSYPAIRTPRYT-VLQALR 338
C+CK LA H C +W G CE+CG +R + VL +L+
Sbjct: 107 CSCKNDLALAHYACALKWFITHGSTVCEICGHVAVNVRPADFNKVLASLK 156
>01_06_0302 -
28318910-28318999,28319118-28319210,28319303-28319383,
28319483-28319633,28319716-28319783,28319989-28320143,
28320268-28320326,28320649-28320899
Length = 315
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 484 CNCKGSLANVHLTCLERWLNQVGRNHCELCGFSYPAIRTPRYT 356
C+C L H C++RW N+ G CE+C + TP YT
Sbjct: 127 CHC---LQYAHHACIQRWCNEKGDTVCEICLQQF----TPNYT 162
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 529 CRICMTRGRERLI-SPCNCKGSL 464
CRIC G E + +PC CKGSL
Sbjct: 59 CRICQEEGDESYMETPCCCKGSL 81
>11_06_0305 +
22209640-22209736,22212679-22212941,22213444-22213530,
22214866-22214937,22215729-22215793,22215918-22216050,
22216397-22216477,22216599-22216688,22217954-22218103
Length = 345
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -2
Query: 466 LANVHLTCLERWLNQVGRNHCELC------GFSYPAIRTPRYTVLQALRLWFGNPR 317
L H C++RW N+ G CE+C G++ P P T++ W +PR
Sbjct: 148 LPYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEPDDTIIDIGGDWARDPR 203
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 31.5 bits (68), Expect = 0.83
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = -2
Query: 652 KTENKLSKLGTDKKKTSGG----LSERSDLVLAQRDSISSIGSNVCRICMTRGRERLISP 485
++ + +++ DK++ + G L+ ++D++ +S I NVC IC GRE L++
Sbjct: 388 QSNDAVNRNDNDKQERNQGSGRKLNTQNDVMTDSGNSEGLIDVNVCDICGDVGREYLLAT 447
Query: 484 CNCKGSLANVHLTCLERWLNQV--GRNHCELC 395
C + H C+ L +V G CE C
Sbjct: 448 CT-RCLEGAEHTYCMRVKLEKVPDGEWLCEEC 478
>01_01_0131 -
1186129-1186242,1186640-1186720,1186843-1186993,
1187100-1187167,1187323-1187438,1188108-1188366
Length = 262
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 466 LANVHLTCLERWLNQVGRNHCELCGFSYPAIRTPRYTVLQALRLWFGNPRN 314
L H C++RW N+ G CE+C + P YT Q L + P N
Sbjct: 100 LQYAHRKCIQRWCNEKGDTVCEICLQQF----KPGYTAPQQLFHYGSIPMN 146
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -2
Query: 529 CRICMTRGRER---LISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
C IC+ E I PCN + HLTC+++WL ++ R C LC
Sbjct: 464 CYICLVEYAEGDCVRILPCNHE-----FHLTCVDKWLKEIHR-VCPLC 505
>10_08_0970 +
21944930-21945061,21945532-21945650,21945758-21945818,
21946241-21946288,21946610-21946726,21947434-21949044
Length = 695
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 330 SAIRAIEAICSLTASSFGSCRLLRPVCWPCASWELSILLSRVTNLVS--STLVGSRKVFH 157
S RA A+C+L RLLR +P ++LS + ++ S L +R+VF
Sbjct: 498 SCFRACAAVCALKCGQQIHGRLLRTGFYPNV-----MILSSLIDMYSRCGYLADARQVFS 552
Query: 156 IASQRPQWTFLW 121
+A Q + T LW
Sbjct: 553 LAVQEKKDTLLW 564
>08_02_1103 - 24329120-24329623
Length = 167
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 541 GSNVCRICMTRGR-ERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
G+ CR+C+ R E +++ C G L H CLE+WL+ C LC
Sbjct: 96 GAADCRVCLARFEPESVVNRLPC-GHL--FHRACLEKWLD-YDHATCPLC 141
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -2
Query: 529 CRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
C ICM R L C A VHL C N G CELC
Sbjct: 881 CDICM-RSETVLNRIFVCSSCKAAVHLDCYRSVTNPTGPWKCELC 924
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -2
Query: 637 LSKLGTDKKKTSGGLSERSDLVLAQRD 557
+S++G+DK ++ GGL + D+V+ QRD
Sbjct: 49 VSRVGSDKSRSHGGLDSKKDVVI-QRD 74
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -2
Query: 274 LSTVTAGLLAVCIVGTQYFVIEGNKFGKLDAGRKQEGISHRITETAMDFFMAIVLCG 104
L T+ G+L++ I+ T +++ N + Q G ++ I+ TAM FF AI G
Sbjct: 335 LGTILKGVLSITII-TGTSLLQNNA-----VSQSQRGAANGISTTAMSFFKAIAPAG 385
>04_04_0897 - 29186821-29187459
Length = 212
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 541 GSNVCRICMTR--GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
G C +C++ G + + NC+ H CL+RW+ + C LC
Sbjct: 108 GGGDCAVCLSGIGGGDEVRRLSNCRHVF---HRGCLDRWMEHDDQRTCPLC 155
>04_04_0854 + 28762149-28762334,28763218-28763315,28763850-28764174
Length = 202
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 529 CRICMTRGRE----RLISPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSYPAIRTPR 362
C IC++ +E R++ C+ N HL CL+ WL + + C +C S + +
Sbjct: 96 CSICLSEYKEKDILRIVPICH-----HNFHLYCLDAWL--LKQTTCPICRISLKELPDGK 148
Query: 361 YTVLQA 344
TV A
Sbjct: 149 STVSSA 154
>12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919
Length = 236
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 538 SNVCRICMTR-GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
S C IC+ R G + CK H CLERWL R+ C C
Sbjct: 183 STECSICLERCGDADGLLELRCKHIF---HSACLERWLR--SRSDCPYC 226
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 176 PTSVELTKFVTLDNKILSSHDAHGQQTGRNSRQEPKDEAVRLQMAS 313
PT+V V + + SS D G TGR S Q+ D +Q S
Sbjct: 253 PTNVNRHMSVAAEPSLASSADLLGSNTGRMSEQDTIDHTTIVQSQS 298
>08_02_1070 - 24106152-24106967
Length = 271
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -2
Query: 532 VCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSYPAIRTPRYTV 353
VCR + G PC+ H C+ WL+ RN C LC F P P+Y
Sbjct: 211 VCRDGVAAGERVKRLPCS-----HGYHEECIMPWLDV--RNSCPLCRFELPT-DDPQYES 262
Query: 352 LQALR 338
+A R
Sbjct: 263 WKASR 267
>04_04_0135 +
23020314-23020389,23021418-23021479,23021935-23022026,
23022210-23022309,23022394-23022435,23022512-23022595,
23022613-23022827,23022915-23022933
Length = 229
Score = 28.3 bits (60), Expect = 7.7
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 432 HLSRQVKCTFARDPL---QLQGEISLSRPRVIQILQTFEPILEMESLCAKTKSD 584
+L R+V TF+ L QL G+ LS V + LQT E LEM C +TK D
Sbjct: 60 NLQRRVNITFSSPVLSAWQLMGQ-DLSGLGVKE-LQTLENQLEMSIRCIRTKKD 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,780,256
Number of Sequences: 37544
Number of extensions: 554497
Number of successful extensions: 1548
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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