SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k20
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical ...    60   2e-09
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    57   1e-08
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    55   5e-08
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    55   5e-08
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    55   5e-08
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    51   1e-06
Z36948-1|CAA85409.1|  180|Caenorhabditis elegans Hypothetical pr...    50   3e-06
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    49   3e-06
Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    33   0.24 
U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.24 
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    32   0.43 
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    32   0.43 
AF036699-2|AAB88361.2|  109|Caenorhabditis elegans Hypothetical ...    32   0.56 
AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical ...    32   0.56 
U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidas...    31   0.99 
U46753-9|AAA85765.1|  226|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    30   1.7  
AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical ...    30   2.3  
Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical ...    29   5.3  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    29   5.3  
U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate rece...    28   7.0  
U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate rece...    28   7.0  
AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA iono...    28   7.0  
U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    28   9.2  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    28   9.2  

>AC006624-2|AAF39784.2|  254|Caenorhabditis elegans Hypothetical
           protein C53D5.2 protein.
          Length = 254

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
 Frame = -2

Query: 556 SISSIGSNVCRICMTRGRER---LISPCNCKGSLANVHLTCLERWLNQVGRN-----HCE 401
           S+ S  +N+CRIC T    R   LISPC C G+L  VH  C+ RWL    R       CE
Sbjct: 8   SLQSASANMCRICHTSTSTRSNPLISPCRCSGTLLFVHKACVVRWLEMSTRKMVPSPRCE 67

Query: 400 LCGFSY 383
           LCG+ Y
Sbjct: 68  LCGYDY 73


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = -2

Query: 559 DSISSIGSNVCRICMT----------RGRERLISPCNCKGSLANVHLTCLERWLNQVGRN 410
           D  +S+G  VCRICM           +  E LISPC C G++   H +CLE WL      
Sbjct: 3   DFNASLGPAVCRICMCGETSIPYLGQQAGEPLISPCKCSGTMGLFHRSCLEHWLTLTSTT 62

Query: 409 HCELCGFSY 383
           +CE+C F++
Sbjct: 63  NCEICKFAF 71


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = -2

Query: 577 LVLAQRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCEL 398
           L+ +  +S +S    +CRIC     + ++ PC+C G++ +VH  CL +W+N   +  CE+
Sbjct: 36  LLASFSESTTSGSRRICRICQMHEGD-MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 94

Query: 397 CGFSY 383
           C   Y
Sbjct: 95  CKSEY 99


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = -2

Query: 577 LVLAQRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCEL 398
           L+ +  +S +S    +CRIC     + ++ PC+C G++ +VH  CL +W+N   +  CE+
Sbjct: 36  LLASFSESTTSGSRRICRICQMHEGD-MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 94

Query: 397 CGFSY 383
           C   Y
Sbjct: 95  CKSEY 99


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = -2

Query: 577 LVLAQRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCEL 398
           L+ +  +S +S    +CRIC     + ++ PC+C G++ +VH  CL +W+N   +  CE+
Sbjct: 82  LLASFSESTTSGSRRICRICQMHEGD-MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 140

Query: 397 CGFSY 383
           C   Y
Sbjct: 141 CKSEY 145


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = -2

Query: 571 LAQRDSISSIGSNVCRICMTR-GRERLISPCNCKGSLANVHLTCLERWLNQVGRN-H--- 407
           LA+ D  +     +C  C      + LISPC C GSL  VH++CL  WL+   R  H   
Sbjct: 183 LARSDMSNEPLCRICHCCWPPDSNDPLISPCRCSGSLQYVHVSCLMHWLDISSRKLHRPA 242

Query: 406 -CELCGFSYPAIRTPRY 359
            CELC + Y   R  +Y
Sbjct: 243 ICELCLYKYRRRRVLKY 259


>Z36948-1|CAA85409.1|  180|Caenorhabditis elegans Hypothetical
           protein D2089.2 protein.
          Length = 180

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 532 VCRICMTR--GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
           +CRIC       + LI PC+C G++A VH  CLE+W+       C +C
Sbjct: 24  ICRICFDNDTSSDSLIKPCSCSGTVAYVHNGCLEQWVRTTSNIQCTIC 71


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = -2

Query: 532 VCRICMTRGRE-RLISPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSY---PAIRTP 365
           +CR+C  RG E  L  PC C GS+  VH  CL  WL    +  CELC   Y   P  R  
Sbjct: 52  MCRVC--RGNEGSLYYPCLCTGSIKYVHQECLVEWLKYSKKEVCELCNHKYSFQPIYRQD 109

Query: 364 RYTVLQALRLWFGNPRNRSHLQSDCLIFWLLSTVTAGLL 248
               L  L +  G   + + +    +I+ ++ T   G++
Sbjct: 110 MPKALPILEILRGVLISGAIMVRTWIIYTIVMTTWLGIV 148


>Z49968-3|CAA90260.1|  189|Caenorhabditis elegans Hypothetical
           protein M110.3 protein.
          Length = 189

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 529 CRICMTRGRERLIS---PCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
           C+ C     +  +S   PC C+GS+  VH  CL  W ++       +C
Sbjct: 16  CKFCFGTESDNALSFVHPCRCRGSIHWVHHQCLAMWFSKANAVQQVMC 63


>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 247 AVCIVGTQYFV-IEGNKFGKLDAGRKQEGISHRITETAMDFFMAIVLCGYSVTVYLLWKD 71
           A+C +    FV +  N FG +     QE ISHRI    + +  A  +      V L+   
Sbjct: 237 AICFLTVSQFVAVFLNSFGMIVLVYIQESISHRIFNLLVVWLYAFPIVVLMFPVILV--- 293

Query: 70  HYIMWNRWRRA 38
           H I  +RWRRA
Sbjct: 294 HQIRSSRWRRA 304


>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 582 DLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTA 755
           D+SD      + SV S   LF V  +  T   M  LV + LL++  K+   FW L  +T 
Sbjct: 58  DISDSEKNWLYYSVVS---LFVVSTIGATILTMSFLVLSILLWRHFKSMRFFWFLTQLTT 114

Query: 756 CTFGISATTTFSLIP 800
             F ISA   F  IP
Sbjct: 115 SAFVISAANLFINIP 129


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 400 LCGFS--YPAIRTPRYTVLQALRLWFGNPRNRSHLQSDCLIFWLLS 269
           LC  S  YP IR     VL  LR++F NP   SHL ++ +IF LLS
Sbjct: 70  LCRLSEVYPPIRNEPNKVL--LRVYF-NPETESHLVAESVIFTLLS 112


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 400 LCGFS--YPAIRTPRYTVLQALRLWFGNPRNRSHLQSDCLIFWLLS 269
           LC  S  YP IR     VL  LR++F NP   SHL ++ +IF LLS
Sbjct: 91  LCRLSEVYPPIRNEPNKVL--LRVYF-NPETESHLVAESVIFTLLS 133


>AF036699-2|AAB88361.2|  109|Caenorhabditis elegans Hypothetical
           protein F58F6.5 protein.
          Length = 109

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 636 SLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTACTFGISATTTFSLIP 800
           SLF V  V  T   +  LV + LL++  K+   FW L  +T   F ISA+  F  IP
Sbjct: 31  SLFVVSTVVATILTLSFLVLSILLWRNFKSMRFFWFLTQLTTSAFIISASNLFINIP 87


>AF025467-3|AAB71035.2|  213|Caenorhabditis elegans Hypothetical
           protein R148.4 protein.
          Length = 213

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 262 TAGLLAVCIVGTQYFV-----IEGNKFGKLDAGRKQEGISHRITETAMDFFMAIVLCGYS 98
           T  L+  C+V T  F      I  + + K+  G   +  + ++ +     FMA+    Y+
Sbjct: 108 TEFLVIFCLVATALFAAFTWSISPSDYSKIPIGSSPKNRNFQLFKLIFSLFMALFHVYYT 167

Query: 97  VTVYLLWKD 71
             VY LW+D
Sbjct: 168 YIVYCLWRD 176


>U53141-3|AAA96105.3|  596|Caenorhabditis elegans Hypothetical
           protein C14C11.3 protein.
          Length = 596

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 500 FPSASHTNSANV*TNTRNGVSLCQNQIRSFR*ATRSFLLIGTKFRQLIFGFC 655
           +PSAS +   +  TN RN +   QNQ R F+   +  ++ G +    + G C
Sbjct: 367 YPSASTSEVRHYETNNRNWIRTKQNQERKFKNGFQGIIVTGWQRYDHLAGLC 418


>AM748821-1|CAO72175.2|  596|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 596

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 500 FPSASHTNSANV*TNTRNGVSLCQNQIRSFR*ATRSFLLIGTKFRQLIFGFC 655
           +PSAS +   +  TN RN +   QNQ R F+   +  ++ G +    + G C
Sbjct: 367 YPSASTSEVRHYETNNRNWIRTKQNQERKFKNGFQGIIVTGWQRYDHLAGLC 418


>U46753-9|AAA85765.1|  226|Caenorhabditis elegans Hypothetical
           protein C34F11.1 protein.
          Length = 226

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -2

Query: 565 QRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLT-CLERWLNQVGRNHCELCGF 389
           QR   S++ ++ C IC     E+ + P  C   L  +    C+++W +      C LC F
Sbjct: 143 QRHRGSALQTSECTICF----EKPVDPRGCPKCLKVIGCKKCVKKWFDTSASKACPLCRF 198

Query: 388 SYPAIR-TPRYTVLQALRLWFGNPRNR 311
            +   R  P    +  L +     +NR
Sbjct: 199 EWKLHRDNPDVVKISTLEVLKRQKQNR 225


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
            protein Y54E10A.11 protein.
          Length = 1446

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = -2

Query: 541  GSNVCRICMTRGRERL--ISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 395
            G   C ICM    ++   +    CK      H  CL +W     ++ C LC
Sbjct: 1391 GVEDCTICMMTVHQQTHQLPKIKCKQCKNKFHSNCLYKWFESSNQSTCPLC 1441


>AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical
           protein C09E7.9 protein.
          Length = 789

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 595 LSERSDLVLAQRDSISSIGSNVCRIC---MTRGRERLISPCNCKGSLANVHLTCLERWLN 425
           L  + D+V A   S + +    C IC   MT  +E +   C C+      HL C  +WLN
Sbjct: 714 LFSQPDIVTASVPS-TELDDTECAICLDEMTNFKETI--KCECR---RRFHLKCATKWLN 767

Query: 424 QVGRNHCELC 395
           +  +  C  C
Sbjct: 768 E--KRECPTC 775


>Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical
           protein F02D10.7 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 478 CKGSLANVHLTCLERWLNQVGRNHCELCGF 389
           C G + + H  C    L +  ++HCE C F
Sbjct: 81  CSGCVHSFHRACFPMKLTEESKSHCESCVF 110


>AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical
           protein T05H4.7 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 354 CYKRSGCGSAIRAIEAICSLTASSFGSCRLL 262
           C+ RSG  ++    +++C+LT +SF   +LL
Sbjct: 34  CFVRSGLSASFPKSDSLCTLTDASFNPMQLL 64


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -2

Query: 289 LIFWLLSTVTAGLLAVCIVGTQYFVIEGNKFGKLDAGRKQEGISHRITETAMDFFMAIVL 110
           L+F  LS+V   +L+V IVG   +      F +L+       + H +TETAM FF  I  
Sbjct: 218 LLFLSLSSVILTILSVFIVGLSIY------FRRLE-------MLHSLTETAM-FFSCISF 263

Query: 109 CGYSV--TVYLLWKDHY 65
           C  SV   V + +KD +
Sbjct: 264 CATSVIYIVSISFKDQF 280


>U10438-16|AAO61447.1|  977|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform b protein.
          Length = 977

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 253 LLAVCIVGTQY--FVIEGNKFGKLDAGRKQEG-ISHRITETA 137
           LLA  I G +Y  F+ +GNK+G   A    +G I + + ETA
Sbjct: 528 LLAKNITGFEYDVFISDGNKYGSRQADGSWDGMIGYLLNETA 569


>U10438-15|AAA19090.3|  908|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 2, isoform a protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 253 LLAVCIVGTQY--FVIEGNKFGKLDAGRKQEG-ISHRITETA 137
           LLA  I G +Y  F+ +GNK+G   A    +G I + + ETA
Sbjct: 459 LLAKNITGFEYDVFISDGNKYGSRQADGSWDGMIGYLLNETA 500


>AF318606-1|AAK01094.2|  977|Caenorhabditis elegans non-NMDA
           ionotropic glutamate receptorsubunit GLR-2 protein.
          Length = 977

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 253 LLAVCIVGTQY--FVIEGNKFGKLDAGRKQEG-ISHRITETA 137
           LLA  I G +Y  F+ +GNK+G   A    +G I + + ETA
Sbjct: 528 LLAKNITGFEYDVFISDGNKYGSRQADGSWDGMIGYLLNETA 569


>U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical
           protein C24G7.2 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 705 LFKGAKTWVSFWILVTACTFGISATTTFSL 794
           +F+G +    FW+++ +C+ G+  T  F L
Sbjct: 95  IFQGKRWATLFWLIMVSCSLGLLITQVFIL 124


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
            protein C09E7.8b protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 595  LSERSDLVLAQRDSISSIGSNVCRIC---MTRGRERLISPCNCKGSLANVHLTCLERWLN 425
            L  + ++V A   S + +    C IC   MT  +E +   C C+      HL C  +WLN
Sbjct: 1005 LFSQPNIVTASITS-TELDDTECAICLDEMTNFKETI--KCQCR---RRFHLECATKWLN 1058

Query: 424  QVGRNHCELC 395
            +  +  C  C
Sbjct: 1059 E--KRECPTC 1066


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
            protein C09E7.8a protein.
          Length = 1114

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -2

Query: 595  LSERSDLVLAQRDSISSIGSNVCRIC---MTRGRERLISPCNCKGSLANVHLTCLERWLN 425
            L  + ++V A   S + +    C IC   MT  +E +   C C+      HL C  +WLN
Sbjct: 1039 LFSQPNIVTASITS-TELDDTECAICLDEMTNFKETI--KCQCR---RRFHLECATKWLN 1092

Query: 424  QVGRNHCELC 395
            +  +  C  C
Sbjct: 1093 E--KRECPTC 1100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,019,163
Number of Sequences: 27780
Number of extensions: 481557
Number of successful extensions: 1525
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -