Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k19
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 75  LYLFIKFPFIISRGVLILLV-LRNQIVHVRFSLRELHFIHTLPRVPVQESFSS 230
           L+  I   F I   V++L V  R+   HV        FIH LPR+ V   +++
Sbjct: 308 LFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYNT 360


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 638 LVSANRRSVVLGIASTWSHQTLSLKPNGSSPHTLGLLASKS 760
           L S+   + V   A  ++ Q  S  P GSSP   G  AS S
Sbjct: 39  LESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTS 79


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 340  CATFHLVDSKCLPPSSETPQLS 275
            C T  +   + LPPSS  P+L+
Sbjct: 1274 CGTVSVPQQQQLPPSSPQPRLT 1295


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 412 RCSTYRTKIAATSWNGFPIT 353
           R ST   K A T W G PI+
Sbjct: 409 RMSTGEMKEAITQWQGNPIS 428


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 188 DEMEFTEAESNMNDLVSEYQQYQDA 114
           DE  F+E +S M   +S + +Y D+
Sbjct: 206 DERSFSEHDSVMLGEISPHHEYYDS 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,818
Number of Sequences: 438
Number of extensions: 6019
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)