Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k16
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    37   0.004
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    31   0.19 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    30   0.45 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    28   1.8  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   5.5  
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    26   5.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   7.3  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 664 LGD-DILLDKYIKQGENIQQMDHLGRNALHLAVCSDNEHAITLLLDAGVNPNHKD 503
           +GD D+++++ I  G N  ++D     ALH AV  +    + +LL  G NP+ +D
Sbjct: 343 VGDYDLIVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARD 397


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  STCLNIRVQNHSPILLSTEKLLYIQMYLPLLWEFRL 177
           S C + R   HS I +S E++ Y+    P +W+F L
Sbjct: 34  SNCEHARFLKHSLIQVSIERIEYLYSIFPNIWQFAL 69


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 595 GRNALHLAVCSDNEHAITLLLDAGVNPNHKDNVGMT 488
           GR+ LHL       +A T L +AG + N +D +G T
Sbjct: 862 GRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYT 897


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 598 DDPFAECFRLALYIYPVIYHHQALPAIKNS 687
           DDP +E F   + +YP++Y    +P++  +
Sbjct: 238 DDPKSELFFPTILLYPLVYQSDFVPSVSEN 267


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 595 GRNALHLAVCSDNEHAITLLLDAGVNPNHKDNVG 494
           G+  LH+A  + +   +  LLD G +P  +D  G
Sbjct: 189 GQTYLHVATKAKDAELVKWLLDNGADPYRRDKFG 222


>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 622 ENIQQMDHLGRNALHLAVCSDNEHAITLLLDAGVNPNHKD 503
           E I   +  G  A+H A  + +     LLL+AG +P+ K+
Sbjct: 62  EVINAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKN 101


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 206 RSRFKFDEPQRRNSQRSG 153
           RSRF  D   RR+SQRSG
Sbjct: 19  RSRFTEDSYSRRDSQRSG 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,846
Number of Sequences: 5004
Number of extensions: 60797
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)