Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k15
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    29   3.8  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    29   6.7  

>02_02_0654 -
           12662931-12663200,12663296-12663550,12664097-12664268,
           12664354-12664581,12664727-12664860,12665018-12665101,
           12665332-12665538,12665641-12665973,12666175-12666281,
           12666439-12666593,12666778-12666810,12666924-12666972,
           12667152-12667312,12667413-12668313,12668391-12668481,
           12668558-12668749
          Length = 1123

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 585 LNLCSPVSIVSRSTNKPKIWNLFDSLVIVKKSYYLYENP 701
           +++ +   ++S     P+ +NLFD +V++ + Y +Y  P
Sbjct: 130 VHIMNETVMISLLQPPPETYNLFDDIVLLSEGYIVYHGP 168


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 633 PKIWNLFDSLVIVKKSYYLYENP 701
           P+ +NLFD ++++ + Y +Y  P
Sbjct: 434 PETYNLFDDIILLSEGYIVYHGP 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,403,930
Number of Sequences: 37544
Number of extensions: 318592
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)