Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k15
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    30   2.0  
AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    29   6.0  

>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 9/30 (30%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 434 FFHSFIKVSVHCLRFAICCYIAI-LCLYLF 520
           +F+ ++K +++  RFA+ C++ + +C Y F
Sbjct: 127 YFYIYLKANIYLFRFAMLCFLTLNICTYSF 156


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 9/30 (30%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 434 FFHSFIKVSVHCLRFAICCYIAI-LCLYLF 520
           +F+ ++K +++  RFA+ C++ + +C Y F
Sbjct: 127 YFYIYLKANIYLFRFAMLCFLTLNICTYSF 156


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 307 TPCYFGISYSLKLQYNIMLNIFIYG*NRNIIFLSLTHQKCNEIFSFFY*GKCSLPKICDL 486
           T  YF +SY L  ++    +I++Y   R IIF +L       +   F+   C + +    
Sbjct: 211 TALYFYLSYHLLFKFGYSTSIWLYKTRRQIIFQAL-------MLCVFHGIVCGIYEFMKY 263

Query: 487 LLYSHTLSI 513
           + +SHTL I
Sbjct: 264 VYFSHTLVI 272


>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 413 VKDKKIIFLFYP*INIFSIILYCSFK-EYEIPK*QGVAMWKEIVKINYCNRLLFNKLQIL 237
           +K  KI+FL++    IF II Y S + +YE P+     M   I+K +     +F  +  L
Sbjct: 186 LKPWKIVFLYWIPSTIFCIIFYSSTEIKYESPERMVYVMNPNIIKKSTKTAFVFVIISCL 245

Query: 236 WRAIYFKI 213
              I++ +
Sbjct: 246 ICLIFYSL 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,371
Number of Sequences: 27780
Number of extensions: 360399
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)