Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k13
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0187 - 1492732-1492935,1493708-1493765,1494871-1494947,149...    29   6.3  
06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262     28   8.3  
02_02_0472 - 10725234-10726119,10726201-10726808                       28   8.3  

>03_01_0187 -
           1492732-1492935,1493708-1493765,1494871-1494947,
           1495086-1495160,1495259-1495315,1495451-1495567,
           1495805-1495915,1496029-1496151,1496304-1496393,
           1496480-1496605,1496687-1496740,1496975-1497055,
           1497147-1497254,1497443-1497514,1497626-1497688,
           1498417-1498629
          Length = 542

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 392 WTTLWLTRCKWLMKLRHKKHKC 327
           W   W+ +CKW  +L H  H C
Sbjct: 475 WDAKWICKCKW--ELGHHNHSC 494


>06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262
          Length = 530

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +1

Query: 673 LWYVSRNYNSNFFLSSYCI*NYRIC*VVETSASFSSTAGLVVVIFSMFXFSRNPSSLXIF 852
           LWY+SR  ++   L    I N  +     T +SF++  GLV    +M  FS+NP  L +F
Sbjct: 208 LWYISRVSSAKAPLKKKGI-NIALFSFSVTVSSFANV-GLVPTNENMAIFSKNPGLLLLF 265


>02_02_0472 - 10725234-10726119,10726201-10726808
          Length = 497

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 597 TQEG*GK*S*NFVGNVLYLSPSAARLQGDGQQLDEW 490
           T E  G  S +FVG   YL+P   R +G G  +D W
Sbjct: 320 TAEPTGARSMSFVGTHEYLAPEIIRGEGHGSAVDWW 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,962
Number of Sequences: 37544
Number of extensions: 306933
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)