Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k12
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = +1

Query: 283 NDDIIRLLTASLVTLNFLPGNFPKQGSSSD----RITF*IQPPYLDKHHALFSIEH*PNF 450
           NDD   L+      LN  P NF    ++       I   I P Y D HH L  I     +
Sbjct: 481 NDDKPFLIKIRQYRLNHKPFNFHITINADKPMKAAIRIFIGPKY-DSHHKLIEIPEDLKY 539

Query: 451 YYE 459
           +YE
Sbjct: 540 FYE 542


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = +1

Query: 283 NDDIIRLLTASLVTLNFLPGNFPKQGSSSD----RITF*IQPPYLDKHHALFSIEH*PNF 450
           NDD   L+      LN  P NF    ++       I   I P Y D HH L  I     +
Sbjct: 481 NDDKPFLIKIRQYRLNHKPFNFHITINADKPMKAAIRIFIGPKY-DSHHKLIEIPEDLKY 539

Query: 451 YYE 459
           +YE
Sbjct: 540 FYE 542


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -3

Query: 265 NIICFRIYIGSMFKCNAEKKLRRKTFGKSLCG 170
           N+ C  +       CNA     +K F    CG
Sbjct: 81  NLKCSLVEFSENKNCNAGSLTVKKNFANKYCG 112


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = -3

Query: 247 IYIGSMFKCNAEKKLRRKTFGKSLCGI*EGNNALPHKSIIVNE 119
           +YI  + K N   + +R         +   +NA PH S++  +
Sbjct: 93  VYIEQLTKLNNAVEEKRPELTNRKSVVFHHDNARPHTSLVTRQ 135


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 418 HGACRDTVAEFKR 380
           H ACRD   EF R
Sbjct: 639 HSACRDIPEEFLR 651


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,000
Number of Sequences: 438
Number of extensions: 3046
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)