Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k11
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-4|CAA93665.1|  212|Caenorhabditis elegans Hypothetical pr...    31   0.43 
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    30   0.76 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    30   0.76 
Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate cyc...    29   1.7  
Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    28   3.1  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    28   3.1  
AF036706-12|AAK39280.1|  343|Caenorhabditis elegans Hypothetical...    27   5.3  
AF040642-2|AAN73874.2|  411|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016675-2|AAB66139.1|  357|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z69792-4|CAA93665.1|  212|Caenorhabditis elegans Hypothetical
           protein F40E10.2 protein.
          Length = 212

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 367 NEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 257
           N EI+KR+G+E++ L   EK  + +  KR  +LH  E
Sbjct: 75  NSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALHMKE 111


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 367 NEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 257
           N EI+KR+G+E++ L   EK  + +  KR  ++H  E
Sbjct: 3   NSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKE 39


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 367 NEEIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNE 257
           N EI+KR+G+E++ L   EK  + +  KR  ++H  E
Sbjct: 87  NSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKE 123


>Z81114-4|CAB03288.2|  688|Caenorhabditis elegans Hypothetical
           protein T04D3.4 protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 107 IFGSAMYRFGRQESNGAVVEVKISHVGKLEGRKHPTLQMFL 229
           +FG  +    + ESNG   ++ +S  GKL G K     +F+
Sbjct: 540 LFGDTVNVANKMESNGIQCKIHVSETGKLNGLKANPSYVFI 580


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 193 QFPDVRDLHFYNCAIRFLP 137
           QFP+++ LHF NC+++  P
Sbjct: 102 QFPELQTLHFKNCSLKTFP 120


>AY652944-1|AAT73711.1|  688|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 107 IFGSAMYRFGRQESNGAVVEVKISHVGKLEGRKHPTLQMFL 229
           +FG  +    + ESNG   ++ +S  GKL G K     +F+
Sbjct: 540 LFGDTVNVANKMESNGIQCKIHVSETGKLNGLKANPSYVFI 580


>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/75 (24%), Positives = 28/75 (37%)
 Frame = -3

Query: 361 EIAKRIGSEYRTLPTYEKGLYEEVFKRHYSLHDNELLKCRWTQYKKHLEGRVFAPFQFPD 182
           E+ KR+G E      Y++  YE   KR+  L      +C    YK          ++  D
Sbjct: 438 EVEKRLGDEVGK--PYKQATYEMARKRYAELVKECNGRCALVDYKLEFYNNATKTYKLFD 495

Query: 181 VRDLHFYNCAIRFLP 137
            R   ++   I   P
Sbjct: 496 ERGFEYFTSGIHISP 510


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +1

Query: 169  EDLSRRETGRAQTPYPPNVSCTVSIGISAARYRAENSAS*TLLRKDLFRTSAAFCTRCRF 348
            +DLS  +T     P   +VS     G +AA   A  S+  T+L   +   S+        
Sbjct: 1134 KDLSAFDTSEIFRPSTESVSRGTGAGAAAAAAAAGASSKDTILPGTVSSASSTSSAAGGT 1193

Query: 349  SSLFLH*HDHMV 384
            SSLF   H HM+
Sbjct: 1194 SSLFEEMHTHML 1205


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +1

Query: 169  EDLSRRETGRAQTPYPPNVSCTVSIGISAARYRAENSAS*TLLRKDLFRTSAAFCTRCRF 348
            +DLS  +T     P   +VS     G +AA   A  S+  T+L   +   S+        
Sbjct: 1134 KDLSAFDTSEIFRPSTESVSRGTGAGAAAAAAAAGASSKDTILPGTVSSASSTSSAAGGT 1193

Query: 349  SSLFLH*HDHMV 384
            SSLF   H HM+
Sbjct: 1194 SSLFEEMHTHML 1205


>AF036706-12|AAK39280.1|  343|Caenorhabditis elegans Hypothetical
           protein T07A9.8 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 244 RWTQYKKHLEGRVFAPFQFPDVRDLHFYNCAIRFLPSESIHRRTKYGFKLKP 89
           R+   K+  E      F+    R+L  Y   + F   E + ++  YG KLKP
Sbjct: 286 RFVSIKQFCEAITKMGFEQSHRRELTDYFMMMEFKKVEKVEQKRPYGLKLKP 337


>AF040642-2|AAN73874.2|  411|Caenorhabditis elegans Hypothetical
           protein C50D2.9 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 136 SESIHRRTK--YGFKLKPGPGVDDFGQMPIPQELII 35
           SE +  R K  YG + K   G  DF Q+PI + +++
Sbjct: 61  SEIMKERNKIRYGTRKKKDSGAIDFSQLPIEEHVVL 96


>Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical
           protein F13D12.3 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 330 LYSLPILFAISSLT*SYGFFLLISAQSAYISFNVYS 437
           ++SLPI   I+S + ++G F++ + + AY+S + YS
Sbjct: 1   MFSLPIFVLIASFSIAHG-FVVRTRRGAYMSSSSYS 35


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 260 VIVQRIVPLKHFFVKTFFVRRQRSVLAADSLRYFFINMIIWFFP 391
           +I++R + LK   V  F V  Q   +   S  +FF++  IW  P
Sbjct: 377 IILRRSIELK--IVPLFLVIGQTGQIEISSFTHFFLDNFIWIRP 418


>AF016675-2|AAB66139.1|  357|Caenorhabditis elegans Hypothetical
           protein T27B7.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -3

Query: 292 VFKRHYSLHDNELLKCRWTQYKKHLEGRVFAPFQFPDVRDLHFYNCAIRFLPSESIHRRT 113
           VF     +  N LL+C  T ++  + G+    +Q  ++   H      +FL S+  H+ T
Sbjct: 23  VFSNFCLIFRNSLLRCSKTDHQ--IVGKCPVAYQQLEISTNH------KFLTSQ--HKNT 72

Query: 112 KYGFKLK 92
           K+ FK+K
Sbjct: 73  KFAFKIK 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,586
Number of Sequences: 27780
Number of extensions: 233761
Number of successful extensions: 683
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)