Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k07
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   2.0  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   2.7  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    27   4.7  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    26   6.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   8.2  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 766  FEIGTFVARSVSESRLVEXELRWLF 840
            F +G FVARS+ +SR++  +   LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 476 AGPIWQILVLNYLWKSRE 423
           +GPIWQ+   N  W+SRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 756 FAKKYNLGDPIAGNFYEAQYDDYVPI 679
           F K+Y   DP AGN ++A YDD + +
Sbjct: 517 FYKQYKPFDP-AGNKHDANYDDIIEL 541


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 423 FSGLPQIIQDQNLPNRSSRSRVLARLTNSNSF 518
           +S +PQ  Q   +PN +  SR+   L+NS  F
Sbjct: 381 YSDIPQQFQCDYVPNVAKESRINVALSNSFGF 412


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/63 (25%), Positives = 23/63 (36%)
 Frame = -3

Query: 882 PEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEA 703
           P K   PRY  +  K   K    EP          +N++ +  AK  NL         E 
Sbjct: 396 PTKARFPRYPTVFNKLDDKRLSSEPNGLKKRLTNSSNYEASPRAKSLNLSQVSLHQACEP 455

Query: 702 QYD 694
           +Y+
Sbjct: 456 EYN 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,511
Number of Sequences: 5004
Number of extensions: 78839
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)