Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte10k07
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0139 + 10632020-10632211,10632876-10632937,10633141-106331... 42 7e-04
06_03_0423 - 20624149-20624375,20625581-20625621,20625709-206257... 40 0.003
02_02_0177 + 7484526-7484723,7484913-7484974,7485606-7485646,748... 38 0.008
06_01_0411 + 2939148-2939354,2939517-2939578,2939712-2939752,294... 38 0.014
01_01_0831 + 6493897-6494100,6494195-6494256,6498047-6498087,649... 37 0.025
06_01_0409 + 2926072-2926275,2926423-2926484,2926598-2926638,292... 36 0.043
11_01_0326 - 2435918-2436135,2436232-2436272,2436486-2436547,243... 35 0.099
12_01_0791 + 7234021-7234221,7234801-7234862,7235441-7235481,723... 34 0.13
12_01_0332 - 2564541-2564758,2564847-2564887,2565138-2565199,256... 34 0.17
09_04_0714 - 19685374-19685430,19685606-19685669,19686117-196862... 33 0.40
02_04_0085 - 19587026-19587243,19587509-19587549,19587811-195878... 30 2.8
01_01_0723 + 5651593-5651751,5651896-5651957,5652130-5652170,565... 30 2.8
04_03_0855 - 20328695-20328912,20329128-20329168,20329782-203298... 29 3.7
04_03_0547 - 17032318-17032392,17032893-17032962,17032979-170331... 29 3.7
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223 29 4.9
>11_03_0139 +
10632020-10632211,10632876-10632937,10633141-10633181,
10633667-10633883,10634229-10634271
Length = 184
Score = 41.9 bits (94), Expect = 7e-04
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R+VF+L++Q R T + R NF +FA+ YNLG P+A F+
Sbjct: 108 PRPTAGIHRFVFILFRQ-------SVRQTTYAPGWRQNFNTRDFAELYNLGSPVAALFFN 160
Query: 705 AQYDD 691
Q ++
Sbjct: 161 CQREN 165
>06_03_0423 -
20624149-20624375,20625581-20625621,20625709-20625770,
20626147-20626338
Length = 173
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R V +LY+Q + T P++ R NF + FA+++NLG P+A ++
Sbjct: 108 PSPTMGIHRIVMVLYQQLGRGTVFAPQV-------RQNFNLRSFARRFNLGKPVAAMYFN 160
Query: 705 AQ 700
Q
Sbjct: 161 CQ 162
>02_02_0177 +
7484526-7484723,7484913-7484974,7485606-7485646,
7485845-7486101
Length = 185
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P TG+ R V +L++Q + T P + R NF FA++YNLG P+A ++
Sbjct: 110 PNPTTGIHRMVLVLFRQLGRETVYAPAV-------RHNFTTRAFARRYNLGAPVAAVYFN 162
Query: 705 AQ 700
Q
Sbjct: 163 CQ 164
>06_01_0411 +
2939148-2939354,2939517-2939578,2939712-2939752,
2941060-2941289
Length = 179
Score = 37.5 bits (83), Expect = 0.014
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R VF+L++Q + T P R NF +FA+ YNLG P+A ++
Sbjct: 113 PRPTMGIHRLVFVLFQQLGRQTVYAPGW-------RQNFNTKDFAELYNLGSPVAAVYFN 165
Query: 705 AQ 700
Q
Sbjct: 166 CQ 167
>01_01_0831 +
6493897-6494100,6494195-6494256,6498047-6498087,
6498218-6498441
Length = 176
Score = 36.7 bits (81), Expect = 0.025
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R VFLL++Q + T P R NF +FA+ YNLG P+A ++
Sbjct: 112 PRPVLGIHRLVFLLFEQLGRQTVYAPGW-------RQNFSTRDFAELYNLGLPVAAVYFN 164
Query: 705 AQ 700
Q
Sbjct: 165 CQ 166
>06_01_0409 +
2926072-2926275,2926423-2926484,2926598-2926638,
2927165-2927394
Length = 178
Score = 35.9 bits (79), Expect = 0.043
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R VF+L++Q + T P R NF FA+ YNLG P+A ++
Sbjct: 112 PRPTMGIHRLVFVLFQQLGRQTVYAPGW-------RQNFSTRNFAELYNLGSPVATVYFN 164
Query: 705 AQ 700
Q
Sbjct: 165 CQ 166
>11_01_0326 -
2435918-2436135,2436232-2436272,2436486-2436547,
2436620-2436820
Length = 173
Score = 34.7 bits (76), Expect = 0.099
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R++F+L+KQ + T P R +F FA++ +LG P+A ++
Sbjct: 111 PKPNIGIHRFIFVLFKQKRRQTVIVPSF-------RDHFNTRRFAEENDLGLPVAAVYFN 163
Query: 705 AQ 700
AQ
Sbjct: 164 AQ 165
>12_01_0791 +
7234021-7234221,7234801-7234862,7235441-7235481,
7235711-7235940
Length = 177
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R VF++++Q + + P R+NF +FA Y+LG P+A ++
Sbjct: 111 PRPTAGIHRLVFIVFRQTVRQSIYAPGW-------RSNFNTRDFAACYSLGSPVAAAYFN 163
Query: 705 AQ 700
Q
Sbjct: 164 CQ 165
>12_01_0332 -
2564541-2564758,2564847-2564887,2565138-2565199,
2565305-2565505
Length = 173
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R+VF+L+KQ + P R +F +FA++ LG P+A ++
Sbjct: 111 PKPSIGIHRFVFVLFKQKRRQAVVVP-------SSRDHFNTRQFAEENELGLPVAAVYFN 163
Query: 705 AQ 700
AQ
Sbjct: 164 AQ 165
>09_04_0714 -
19685374-19685430,19685606-19685669,19686117-19686256,
19687916-19687969,19688407-19688451,19689480-19689517,
19689713-19689831,19689955-19690016,19691038-19691157
Length = 232
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 813 EPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDYV 685
E R T + R NF + +F+ YNLG P+A ++ Q + V
Sbjct: 147 EARQTVYAPGWRQNFNVRDFSAFYNLGPPVAALYFNCQKESGV 189
>02_04_0085 -
19587026-19587243,19587509-19587549,19587811-19587872,
19587990-19588190
Length = 173
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R++ +L++Q + P R F +FA+ +LG P+A ++
Sbjct: 111 PRPNIGIHRFILVLFRQKRRQAVSPP-------PSRDRFSTRQFAEDNDLGLPVAAVYFN 163
Query: 705 AQ 700
AQ
Sbjct: 164 AQ 165
>01_01_0723 +
5651593-5651751,5651896-5651957,5652130-5652170,
5654105-5654352
Length = 169
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFY 709
P G+ R +L++Q ++ D+P L R NF FA + LG P+A F+
Sbjct: 97 PRPAAGIHRVAVVLFRQMARGGVDQPPLL------RHNFSTRGFADDHALGAPVAAAFF 149
>04_03_0855 -
20328695-20328912,20329128-20329168,20329782-20329843,
20330023-20330223
Length = 173
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
P G+ R+V +L+KQ + R T R F FA +LG P+A ++
Sbjct: 111 PKPNIGIHRFVLVLFKQ-------KRRQAVTPPSSRDYFSTRRFAADNDLGLPVAAVYFN 163
Query: 705 AQ 700
AQ
Sbjct: 164 AQ 165
>04_03_0547 -
17032318-17032392,17032893-17032962,17032979-17033103,
17033196-17033252,17034152-17034217
Length = 130
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 316 KTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 414
K +R PS GG I K LL L++ +H H ++H
Sbjct: 89 KDPERKPSLGGDISLPAKILLMLYDQDHTHSFMH 122
>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
Length = 220
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 307 NKLKTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 414
N + +R PS GG I T+ LL L++ +H Y+H
Sbjct: 176 NNMMDSERKPSLGGEIAPPTEILLMLYDQDHTPTYMH 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,260
Number of Sequences: 37544
Number of extensions: 416974
Number of successful extensions: 766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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