Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k07
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...    99   4e-21
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...    99   4e-21
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    48   7e-06
Z92829-7|CAB07347.1|  284|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      29   5.9  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    29   5.9  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    29   5.9  
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    28   7.8  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    28   7.8  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    28   7.8  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
 Frame = -3

Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEP-RLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFY 709
           PP KTGL RYV+L+YKQ  ++   E  RLTNTS DKR  +K A+F  K+ LG P+ GN +
Sbjct: 109 PPPKTGLHRYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLF 168

Query: 708 EAQYDDYVPILYKQLGA 658
           +A+YDDYVPIL KQLGA
Sbjct: 169 QAEYDDYVPILNKQLGA 185


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
 Frame = -3

Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEP-RLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFY 709
           PP KTGL RYV+L+YKQ  ++   E  RLTNTS DKR  +K A+F  K+ LG P+ GN +
Sbjct: 145 PPPKTGLHRYVYLIYKQSGRIEDAEHGRLTNTSGDKRGGWKAADFVAKHKLGAPVFGNLF 204

Query: 708 EAQYDDYVPILYKQLGA 658
           +A+YDDYVPIL KQLGA
Sbjct: 205 QAEYDDYVPILNKQLGA 221


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = -3

Query: 885 PPEKTGLPRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYE 706
           P  +T L RYV L+++   +      R++      RA F + +F +K  LGDPIAGNF+ 
Sbjct: 114 PGPRTDLHRYVILMWEHAGR------RISVPKPSSRAKFNVKQFIEKNKLGDPIAGNFFL 167

Query: 705 AQYD 694
           AQ++
Sbjct: 168 AQHE 171


>Z92829-7|CAB07347.1|  284|Caenorhabditis elegans Hypothetical
           protein F10A3.11 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 711 RSCPQSDPLGCTSWRTRQF 767
           +SCP  D  GCT+W+   F
Sbjct: 251 KSCPSVDSYGCTNWKNYDF 269


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 50  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 208
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 50  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 208
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 50  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 208
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 50  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 208
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +2

Query: 50  FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 208
           FS++++ + Y+ +  +++        D+  +  ++R ++ + S+SNV   N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 782 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSSSVLKYAFLCVDTIRQGLLL 609
           NVP+   P SP           TST  S TT ++  T +  L      V T+R+G L+
Sbjct: 243 NVPVDTCPVSPSCQE---EPTPTSTTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLM 297


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 782 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSSSVLKYAFLCVDTIRQGLLL 609
           NVP+   P SP           TST  S TT ++  T +  L      V T+R+G L+
Sbjct: 243 NVPVDTCPVSPSCQE---EPTPTSTTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLM 297


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 398 KC-SELNKNNNFVFLLMCPPSDGFLLIVLSLFYTK 297
           KC    +K NN+ +L++   + G LL  +S FY K
Sbjct: 277 KCFGNRHKANNYGYLILSTTTSGILLAAISQFYLK 311


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 782 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSSSVLKYAFLCVDTIRQGLLL 609
           NVP+   P SP           TST  S TT ++  T +  L      V T+R+G L+
Sbjct: 243 NVPVDTCPVSPSCQE---EPTPTSTTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLM 297


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 782 NVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSSSVLKYAFLCVDTIRQGLLL 609
           NVP+   P SP           TST  S TT ++  T +  L      V T+R+G L+
Sbjct: 243 NVPVDTCPVSPSCQE---EPTPTSTTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLM 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,955,101
Number of Sequences: 27780
Number of extensions: 431721
Number of successful extensions: 1174
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)