Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k07
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.92 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 380 YLIPSIFIFIYILNLLWTSTNNSRPKFAKSV 472
           Y+IP++ + +  L +LW  + ++    A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 555 RERLYTFLSIYIKMNCCSLVSLKLENGWTD 466
           RE  Y  + IYI   CC LV +   + W D
Sbjct: 239 REFSYYLIQIYIP--CCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 555 RERLYTFLSIYIKMNCCSLVSLKLENGWTD 466
           RE  Y  + IYI   CC LV +   + W D
Sbjct: 239 REFSYYLIQIYIP--CCMLVIVSWVSFWLD 266


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 380 YLIPSIFIFIYILNLLWTSTNNSR 451
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 296 LLYKINLKQSKGIRPTGDTSKEKQNYCFYLIPS 394
           L  +  LK +K +RP  +       YC+ L P+
Sbjct: 195 LFMEETLKAAKRMRPAANWGYYAYPYCYNLTPN 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 380 YLIPSIFIFIYILNLLWTSTNNSR 451
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,789
Number of Sequences: 438
Number of extensions: 5501
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)