Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k06
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    36   0.009
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    27   2.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   2.4  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   3.2  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  

>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 659 VGIGALSGYLFASKRGIPGRLFFTSLGALAGGALCFPKETDEI 531
           V +G ++G +FA  R  P R   TSL   A    CFPK +  I
Sbjct: 81  VVVGGMAGNIFARNRIAPARWLITSLSTAATFMFCFPKTSKNI 123


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 659 VGIGALSGYLFASKRGIPGRLFFTSLGALAGGALCFPKET 540
           V  GAL+G L+ S RG+      +SL A A G     K +
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 344 FLGLTWIDT*DSILYTYSTF*APWEQVDRLHKVICRVSLNCDCISNCKLLEQ 499
           FLG ++++T  + ++T +T  +PW  V      IC   + C C+   KL E+
Sbjct: 200 FLGDSFMETTKAWIFTMTT--SPWMLVRHTATTICCDIMRCLCLIVNKLSEK 249


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 554 STKPHLPKLQDW*RTNDQVYLVLKRKGIRS 643
           S   +L K+ DW   ND V L   R+GI S
Sbjct: 316 SLNVNLEKVHDWEECNDDVALQYAREGIES 345


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 289 HMRKICILSTHQKKSNNNNNFKTYVSHSQHR-*SPY 185
           H+ +   + TH    +NN++F  Y  H +HR  SPY
Sbjct: 457 HLNRPPPIETHYSYESNNSSFSPYY-HKRHRQISPY 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,467
Number of Sequences: 5004
Number of extensions: 56280
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)