Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k06
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    29   3.3  
03_05_0543 - 25404630-25405408,25405461-25405605                       28   7.7  

>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +1

Query: 535 SSVSFGKHKAPPAKAPRLVKNKRPGIPRFEAKRYPLK 645
           SS S    KAPP K   L K + P    F    Y LK
Sbjct: 765 SSSSKEPEKAPPVKVDELAKKEEPKFQAFSGTSYSLK 801


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 565 PPAKAPRLVKNKR-PGI--PRFEAKRYPLKAPIPTTPCLSSKF 684
           PP   PR       PG+  P    +R P  AP P TP LS +F
Sbjct: 133 PPQPEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRF 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,468,412
Number of Sequences: 37544
Number of extensions: 336227
Number of successful extensions: 899
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)