Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k06
         (816 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF086762-1|AAF28400.1| 1111|Homo sapiens C11orf9 protein.              30   8.7  
AB023171-1|BAA76798.2| 1183|Homo sapiens KIAA0954 protein protein.     30   8.7  

>AF086762-1|AAF28400.1| 1111|Homo sapiens C11orf9 protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = +1

Query: 535 SSVSFGKHKAPPAKAPRLVKNKRPGIPRFEAKRYPLKAPIPTTPCLSSKFFGSLIYALKS 714
           SS +F    +  ++A  +   KRP  P+  +K     + +P   C+S +F    I AL  
Sbjct: 711 SSGAFSHAGSQFSRAGSVPHKKRP--PKVASKS---SSVVPDQACISQRFLQGTIIALVV 765

Query: 715 VLAFLMLTQISSFMLS 762
           V+AF +++  + ++LS
Sbjct: 766 VMAFSVVSMSTLYVLS 781


>AB023171-1|BAA76798.2| 1183|Homo sapiens KIAA0954 protein protein.
          Length = 1183

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = +1

Query: 535 SSVSFGKHKAPPAKAPRLVKNKRPGIPRFEAKRYPLKAPIPTTPCLSSKFFGSLIYALKS 714
           SS +F    +  ++A  +   KRP  P+  +K     + +P   C+S +F    I AL  
Sbjct: 752 SSGAFSHAGSQFSRAGSVPHKKRP--PKVASKS---SSVVPDQACISQRFLQGTIIALVV 806

Query: 715 VLAFLMLTQISSFMLS 762
           V+AF +++  + ++LS
Sbjct: 807 VMAFSVVSMSTLYVLS 822


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,963,006
Number of Sequences: 237096
Number of extensions: 1881717
Number of successful extensions: 3949
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3949
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)