Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k06
         (816 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021237-1|AAX33385.1|  226|Drosophila melanogaster RH01253p pro...    54   3e-07
AY060852-1|AAL28400.1|  226|Drosophila melanogaster GM03014p pro...    54   3e-07
AE014297-2155|AAF55278.1|  226|Drosophila melanogaster CG5903-PA...    54   3e-07
AE014296-1807|AAN11923.1|  332|Drosophila melanogaster CG32056-P...    33   0.47 

>BT021237-1|AAX33385.1|  226|Drosophila melanogaster RH01253p
           protein.
          Length = 226

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 22/75 (29%), Positives = 44/75 (58%)
 Frame = -2

Query: 698 MRDPKNLELRHGVVGIGALSGYLFASKRGIPGRLFFTSLGALAGGALCFPKETDEIFRSA 519
           + +P+N   R G + +G L+G++FA++ G   ++ ++ +GA A  ++C+P++ +E  R  
Sbjct: 111 LNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIGAGAVASMCYPRQAEENCRVV 170

Query: 518 MYHFGKAALGVYNLI 474
           +Y   K     YN I
Sbjct: 171 LYEGRKIFAVAYNFI 185


>AY060852-1|AAL28400.1|  226|Drosophila melanogaster GM03014p
           protein.
          Length = 226

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 22/75 (29%), Positives = 44/75 (58%)
 Frame = -2

Query: 698 MRDPKNLELRHGVVGIGALSGYLFASKRGIPGRLFFTSLGALAGGALCFPKETDEIFRSA 519
           + +P+N   R G + +G L+G++FA++ G   ++ ++ +GA A  ++C+P++ +E  R  
Sbjct: 111 LNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIGAGAVASMCYPRQAEENCRVV 170

Query: 518 MYHFGKAALGVYNLI 474
           +Y   K     YN I
Sbjct: 171 LYEGRKIFAVAYNFI 185


>AE014297-2155|AAF55278.1|  226|Drosophila melanogaster CG5903-PA
           protein.
          Length = 226

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 22/75 (29%), Positives = 44/75 (58%)
 Frame = -2

Query: 698 MRDPKNLELRHGVVGIGALSGYLFASKRGIPGRLFFTSLGALAGGALCFPKETDEIFRSA 519
           + +P+N   R G + +G L+G++FA++ G   ++ ++ +GA A  ++C+P++ +E  R  
Sbjct: 111 LNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIGAGAVASMCYPRQAEENCRVV 170

Query: 518 MYHFGKAALGVYNLI 474
           +Y   K     YN I
Sbjct: 171 LYEGRKIFAVAYNFI 185


>AE014296-1807|AAN11923.1|  332|Drosophila melanogaster CG32056-PC,
           isoform C protein.
          Length = 332

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = -2

Query: 485 YNLICSHNLSLRDRLPCEADQPAPKELK---KLNKCTK 381
           YN ICS + +LR  +  EA++P PK+L+   +LNK  K
Sbjct: 50  YNQICSRSQTLRQLVCREANKPLPKKLRHTMRLNKSAK 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,672,416
Number of Sequences: 53049
Number of extensions: 599221
Number of successful extensions: 2023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)