Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte10k06
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.8  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 271 ILSTHQKKSNNNNNFKTY 218
           I S   K  +NNNN+K Y
Sbjct: 315 ISSLSNKTIHNNNNYKNY 332


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 271 ILSTHQKKSNNNNNFKTYVSHSQHR*SPYIIQI 173
           I S   K  +NNNN+  Y +   +    YI QI
Sbjct: 304 ISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQI 336


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 519 YVPFRQSCSRSLQFDMQSQFKLTRQITL 436
           +V  R S    LQFD+  +  +TRQ  L
Sbjct: 117 HVESRPSKKEGLQFDVLVKVDMTRQYLL 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,989
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)